Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 STX16-NPEPL1-202ENST00000530122 3433 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
DEPDC4Q8N2C3 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.23
DEPDC4Q8N2C3 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC13.65□□□□□ -0.23
DEPDC4Q8N2C3 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 TP73-213ENST00000604479 1623 ntTSL 5 BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 HNRNPH1-202ENST00000356731 3667 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 AC015909.5-201ENST00000624336 2266 ntBASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 AC007274.1-201ENST00000439805 662 ntBASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 AL589987.1-201ENST00000453380 819 ntBASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 RN7SL399P-201ENST00000471648 279 ntBASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 POLE2-203ENST00000553805 496 ntTSL 2 BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 ZNF93-205ENST00000591366 590 ntTSL 3 BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 LINC01115-203ENST00000606068 577 ntBASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 AL008721.1-201ENST00000609964 604 ntBASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 MIR6074-201ENST00000612054 107 ntBASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 SRP9-204ENST00000619790 377 ntTSL 2 BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC13.64□□□□□ -0.23
DEPDC4Q8N2C3 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 TVP23C-CDRT4-203ENST00000522212 2833 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 MYADML-201ENST00000474610 2147 ntBASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 AL512384.1-201ENST00000406683 331 ntBASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 BTG3P1-201ENST00000435859 716 ntBASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 RPS15-202ENST00000585665 467 ntTSL 3 BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 AC022726.2-201ENST00000634673 547 ntBASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
DEPDC4Q8N2C3 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms