Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE4Q8N205 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE4Q8N205 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE4Q8N205 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC17.79■□□□□ 0.44
SYNE4Q8N205 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE4Q8N205 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC17.79■□□□□ 0.44
SYNE4Q8N205 HCG27-204ENST00000424675 895 ntTSL 3 BASIC17.79■□□□□ 0.44
SYNE4Q8N205 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC17.79■□□□□ 0.44
SYNE4Q8N205 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC17.79■□□□□ 0.44
SYNE4Q8N205 PPIA-208ENST00000489459 907 ntTSL 2 BASIC17.79■□□□□ 0.44
SYNE4Q8N205 RN7SL564P-201ENST00000496309 250 ntBASIC17.79■□□□□ 0.44
SYNE4Q8N205 AC093909.3-201ENST00000504783 336 ntBASIC17.79■□□□□ 0.44
SYNE4Q8N205 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC17.79■□□□□ 0.44
SYNE4Q8N205 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC17.79■□□□□ 0.44
SYNE4Q8N205 PPIA-210ENST00000620047 827 ntTSL 5 BASIC17.79■□□□□ 0.44
SYNE4Q8N205 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC17.79■□□□□ 0.44
SYNE4Q8N205 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE4Q8N205 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC17.79■□□□□ 0.44
SYNE4Q8N205 AC025183.3-201ENST00000623526 1482 ntBASIC17.79■□□□□ 0.44
SYNE4Q8N205 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE4Q8N205 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE4Q8N205 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC17.79■□□□□ 0.44
SYNE4Q8N205 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE4Q8N205 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
SYNE4Q8N205 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE4Q8N205 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC17.79■□□□□ 0.44
SYNE4Q8N205 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
SYNE4Q8N205 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
SYNE4Q8N205 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC17.79■□□□□ 0.44
SYNE4Q8N205 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
SYNE4Q8N205 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC17.78■□□□□ 0.44
SYNE4Q8N205 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC17.78■□□□□ 0.44
SYNE4Q8N205 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC17.78■□□□□ 0.44
SYNE4Q8N205 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
SYNE4Q8N205 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SYNE4Q8N205 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SYNE4Q8N205 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SYNE4Q8N205 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SYNE4Q8N205 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
SYNE4Q8N205 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SYNE4Q8N205 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC17.78■□□□□ 0.44
SYNE4Q8N205 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SYNE4Q8N205 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SYNE4Q8N205 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC17.78■□□□□ 0.44
SYNE4Q8N205 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC17.78■□□□□ 0.44
SYNE4Q8N205 AQP7P5-201ENST00000428759 1049 ntBASIC17.78■□□□□ 0.44
SYNE4Q8N205 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC17.78■□□□□ 0.44
SYNE4Q8N205 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC17.78■□□□□ 0.44
SYNE4Q8N205 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SYNE4Q8N205 AQP7P4-201ENST00000447083 1042 ntBASIC17.78■□□□□ 0.44
SYNE4Q8N205 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC17.78■□□□□ 0.44
SYNE4Q8N205 AQP7P2-201ENST00000453967 1041 ntBASIC17.78■□□□□ 0.44
SYNE4Q8N205 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC17.78■□□□□ 0.44
SYNE4Q8N205 AQP7P3-201ENST00000624547 1041 ntBASIC17.78■□□□□ 0.44
SYNE4Q8N205 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SYNE4Q8N205 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SYNE4Q8N205 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SYNE4Q8N205 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
SYNE4Q8N205 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
SYNE4Q8N205 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
SYNE4Q8N205 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SYNE4Q8N205 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SYNE4Q8N205 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SYNE4Q8N205 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC17.77■□□□□ 0.44
SYNE4Q8N205 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC17.77■□□□□ 0.44
SYNE4Q8N205 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SYNE4Q8N205 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
SYNE4Q8N205 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC17.77■□□□□ 0.44
SYNE4Q8N205 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SYNE4Q8N205 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SYNE4Q8N205 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC17.77■□□□□ 0.44
SYNE4Q8N205 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SYNE4Q8N205 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SYNE4Q8N205 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.77■□□□□ 0.44
SYNE4Q8N205 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SYNE4Q8N205 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SYNE4Q8N205 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SYNE4Q8N205 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SYNE4Q8N205 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SYNE4Q8N205 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
SYNE4Q8N205 AC108734.2-201ENST00000420887 1069 ntBASIC17.77■□□□□ 0.44
SYNE4Q8N205 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SYNE4Q8N205 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
SYNE4Q8N205 AC093826.1-201ENST00000508655 993 ntBASIC17.77■□□□□ 0.44
SYNE4Q8N205 RNA5SP406-201ENST00000516106 112 ntBASIC17.77■□□□□ 0.44
SYNE4Q8N205 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC17.77■□□□□ 0.44
SYNE4Q8N205 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC17.77■□□□□ 0.44
SYNE4Q8N205 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC17.77■□□□□ 0.44
SYNE4Q8N205 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC17.77■□□□□ 0.44
SYNE4Q8N205 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC17.77■□□□□ 0.44
SYNE4Q8N205 RN7SL455P-201ENST00000580629 282 ntBASIC17.77■□□□□ 0.44
SYNE4Q8N205 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC17.77■□□□□ 0.44
SYNE4Q8N205 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC17.77■□□□□ 0.44
SYNE4Q8N205 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SYNE4Q8N205 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SYNE4Q8N205 AC002044.2-201ENST00000624910 970 ntBASIC17.77■□□□□ 0.44
SYNE4Q8N205 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SYNE4Q8N205 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
SYNE4Q8N205 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SYNE4Q8N205 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms