Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC8.55□□□□□ -1.04
HSPG2P98160 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC8.55□□□□□ -1.04
HSPG2P98160 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 LINC01137-201ENST00000424989 1395 ntTSL 2 BASIC8.55□□□□□ -1.04
HSPG2P98160 RBMS3-210ENST00000456853 1394 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC8.55□□□□□ -1.04
HSPG2P98160 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC8.55□□□□□ -1.04
HSPG2P98160 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 HLA-DQA1-201ENST00000343139 1591 ntAPPRIS P1 BASIC8.55□□□□□ -1.04
HSPG2P98160 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC8.55□□□□□ -1.04
HSPG2P98160 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC8.55□□□□□ -1.04
HSPG2P98160 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 PHF5A-201ENST00000216252 1086 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 RPSAP61-201ENST00000412542 878 ntBASIC8.55□□□□□ -1.04
HSPG2P98160 AC027290.1-201ENST00000537827 484 ntTSL 5 BASIC8.55□□□□□ -1.04
HSPG2P98160 AC109597.2-201ENST00000569407 927 ntTSL 3 BASIC8.55□□□□□ -1.04
HSPG2P98160 MIR4309-201ENST00000582498 83 ntBASIC8.55□□□□□ -1.04
HSPG2P98160 AC008764.4-207ENST00000600705 956 ntTSL 2 BASIC8.55□□□□□ -1.04
HSPG2P98160 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC8.55□□□□□ -1.04
HSPG2P98160 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 EEF1G-201ENST00000329251 1523 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC8.55□□□□□ -1.04
HSPG2P98160 GSN-206ENST00000394353 2311 ntTSL 2 BASIC8.55□□□□□ -1.04
HSPG2P98160 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 GRP-201ENST00000256857 848 ntAPPRIS P3 TSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 OR52N1-201ENST00000317078 963 ntAPPRIS P1 BASIC8.55□□□□□ -1.04
HSPG2P98160 SNORA30.1-201ENST00000363193 129 ntBASIC8.55□□□□□ -1.04
HSPG2P98160 LCN12-202ENST00000371633 579 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 PRSS45-201ENST00000442359 687 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 RASGRF2-AS1-202ENST00000505694 535 ntTSL 3 BASIC8.55□□□□□ -1.04
HSPG2P98160 UBE2D3-221ENST00000507845 577 ntTSL 4 BASIC8.55□□□□□ -1.04
HSPG2P98160 AL583722.3-201ENST00000553433 503 ntTSL 4 BASIC8.55□□□□□ -1.04
HSPG2P98160 ADSSL1-208ENST00000555674 520 ntTSL 3 BASIC8.55□□□□□ -1.04
HSPG2P98160 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC8.55□□□□□ -1.04
HSPG2P98160 AC245884.8-201ENST00000599382 880 ntBASIC8.55□□□□□ -1.04
HSPG2P98160 AC006273.1-201ENST00000606966 861 ntBASIC8.55□□□□□ -1.04
HSPG2P98160 AL590491.2-202ENST00000611126 418 ntTSL 5 BASIC8.55□□□□□ -1.04
HSPG2P98160 MIR8071-1-201ENST00000616769 65 ntBASIC8.55□□□□□ -1.04
HSPG2P98160 MIR8071-2-201ENST00000616772 65 ntBASIC8.55□□□□□ -1.04
HSPG2P98160 LINC00869-208ENST00000621156 737 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 AL590094.1-206ENST00000635959 478 ntTSL 5 BASIC8.55□□□□□ -1.04
HSPG2P98160 AL590094.1-209ENST00000637260 499 ntTSL 5 BASIC8.55□□□□□ -1.04
HSPG2P98160 ANP32B-201ENST00000339399 1463 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 ARRDC5-201ENST00000381781 1638 ntAPPRIS P1 TSL 3 BASIC8.55□□□□□ -1.04
HSPG2P98160 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 AC020658.6-201ENST00000623564 1870 ntBASIC8.55□□□□□ -1.04
HSPG2P98160 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC8.55□□□□□ -1.04
HSPG2P98160 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC8.55□□□□□ -1.04
HSPG2P98160 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
HSPG2P98160 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC8.55□□□□□ -1.04
HSPG2P98160 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC8.55□□□□□ -1.04
HSPG2P98160 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC8.55□□□□□ -1.04
HSPG2P98160 LMX1A-203ENST00000367893 1342 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
HSPG2P98160 AC069421.1-201ENST00000447462 323 ntBASIC8.54□□□□□ -1.04
HSPG2P98160 CNN2P1-201ENST00000453616 918 ntBASIC8.54□□□□□ -1.04
HSPG2P98160 AC004969.1-201ENST00000471553 578 ntTSL 5 BASIC8.54□□□□□ -1.04
HSPG2P98160 MYCBP-203ENST00000494695 750 ntTSL 2 BASIC8.54□□□□□ -1.04
HSPG2P98160 CLNK-203ENST00000507719 1143 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
HSPG2P98160 MECP2-226ENST00000640414 897 ntTSL 5 BASIC8.54□□□□□ -1.04
HSPG2P98160 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC8.54□□□□□ -1.04
HSPG2P98160 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
HSPG2P98160 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC8.54□□□□□ -1.04
HSPG2P98160 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC8.54□□□□□ -1.04
HSPG2P98160 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC8.54□□□□□ -1.04
HSPG2P98160 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
HSPG2P98160 RUSC1-AS1-202ENST00000446880 1836 ntTSL 2 BASIC8.54□□□□□ -1.04
HSPG2P98160 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC8.54□□□□□ -1.04
HSPG2P98160 PSMB8-201ENST00000374881 1351 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
HSPG2P98160 IMMP1L-201ENST00000278200 795 ntAPPRIS P1 TSL 2 BASIC8.54□□□□□ -1.04
HSPG2P98160 ABCD3-201ENST00000315713 884 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
HSPG2P98160 SULT1A3-201ENST00000338971 1097 ntAPPRIS P2 TSL 1 (best) BASIC8.54□□□□□ -1.04
HSPG2P98160 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC8.54□□□□□ -1.04
HSPG2P98160 TXLNGY-202ENST00000407724 1000 ntTSL 3 BASIC8.54□□□□□ -1.04
HSPG2P98160 AC064853.1-201ENST00000413096 540 ntTSL 4 BASIC8.54□□□□□ -1.04
HSPG2P98160 AL121656.1-201ENST00000440786 482 ntTSL 5 BASIC8.54□□□□□ -1.04
HSPG2P98160 RPSAP16-201ENST00000447583 821 ntBASIC8.54□□□□□ -1.04
HSPG2P98160 AL359915.1-201ENST00000457719 898 ntTSL 2 BASIC8.54□□□□□ -1.04
HSPG2P98160 JPT1-205ENST00000470924 663 ntTSL 5 BASIC8.54□□□□□ -1.04
HSPG2P98160 MYADML-201ENST00000474610 2147 ntBASIC8.54□□□□□ -1.04
HSPG2P98160 AL352977.2-201ENST00000557101 547 ntTSL 4 BASIC8.54□□□□□ -1.04
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms