Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 AC023824.1-201ENST00000562945 2975 ntBASIC17.82■□□□□ 0.44
SYNE4Q8N205 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SYNE4Q8N205 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SYNE4Q8N205 RN7SL832P-201ENST00000607781 1756 ntBASIC17.81■□□□□ 0.44
SYNE4Q8N205 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
SYNE4Q8N205 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
SYNE4Q8N205 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC17.81■□□□□ 0.44
SYNE4Q8N205 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
SYNE4Q8N205 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC17.81■□□□□ 0.44
SYNE4Q8N205 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SYNE4Q8N205 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
SYNE4Q8N205 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SYNE4Q8N205 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SYNE4Q8N205 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SYNE4Q8N205 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SYNE4Q8N205 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
SYNE4Q8N205 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC17.81■□□□□ 0.44
SYNE4Q8N205 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC17.81■□□□□ 0.44
SYNE4Q8N205 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC17.81■□□□□ 0.44
SYNE4Q8N205 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SYNE4Q8N205 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SYNE4Q8N205 NHP2-202ENST00000314397 599 ntTSL 2 BASIC17.81■□□□□ 0.44
SYNE4Q8N205 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SYNE4Q8N205 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC17.81■□□□□ 0.44
SYNE4Q8N205 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SYNE4Q8N205 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SYNE4Q8N205 STK16-203ENST00000409516 895 ntTSL 2 BASIC17.81■□□□□ 0.44
SYNE4Q8N205 FAU-202ENST00000434372 533 ntTSL 2 BASIC17.81■□□□□ 0.44
SYNE4Q8N205 SCARNA12-201ENST00000459155 270 ntBASIC17.81■□□□□ 0.44
SYNE4Q8N205 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SYNE4Q8N205 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC17.81■□□□□ 0.44
SYNE4Q8N205 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC17.81■□□□□ 0.44
SYNE4Q8N205 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC17.81■□□□□ 0.44
SYNE4Q8N205 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SYNE4Q8N205 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC17.81■□□□□ 0.44
SYNE4Q8N205 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC17.81■□□□□ 0.44
SYNE4Q8N205 HKR1-225ENST00000592168 566 ntTSL 4 BASIC17.81■□□□□ 0.44
SYNE4Q8N205 SIGLEC22P-201ENST00000599104 714 ntBASIC17.81■□□□□ 0.44
SYNE4Q8N205 ETV2-207ENST00000619399 994 ntTSL 5 BASIC17.81■□□□□ 0.44
SYNE4Q8N205 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC17.81■□□□□ 0.44
SYNE4Q8N205 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SYNE4Q8N205 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SYNE4Q8N205 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC17.81■□□□□ 0.44
SYNE4Q8N205 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC17.81■□□□□ 0.44
SYNE4Q8N205 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
SYNE4Q8N205 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
SYNE4Q8N205 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC17.81■□□□□ 0.44
SYNE4Q8N205 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SYNE4Q8N205 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
SYNE4Q8N205 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
SYNE4Q8N205 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SYNE4Q8N205 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SYNE4Q8N205 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SYNE4Q8N205 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC17.8■□□□□ 0.44
SYNE4Q8N205 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SYNE4Q8N205 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC17.8■□□□□ 0.44
SYNE4Q8N205 AC113367.3-201ENST00000508316 1912 ntBASIC17.8■□□□□ 0.44
SYNE4Q8N205 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC17.8■□□□□ 0.44
SYNE4Q8N205 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC17.8■□□□□ 0.44
SYNE4Q8N205 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC17.8■□□□□ 0.44
SYNE4Q8N205 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SYNE4Q8N205 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
SYNE4Q8N205 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.8■□□□□ 0.44
SYNE4Q8N205 SAT1-201ENST00000379251 801 ntTSL 2 BASIC17.8■□□□□ 0.44
SYNE4Q8N205 SAT1-202ENST00000379253 909 ntTSL 2 BASIC17.8■□□□□ 0.44
SYNE4Q8N205 SAT1-203ENST00000379254 868 ntTSL 3 BASIC17.8■□□□□ 0.44
SYNE4Q8N205 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SYNE4Q8N205 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SYNE4Q8N205 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SYNE4Q8N205 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
SYNE4Q8N205 GCSHP3-201ENST00000431120 391 ntBASIC17.8■□□□□ 0.44
SYNE4Q8N205 CSNK1G2P1-201ENST00000442675 955 ntBASIC17.8■□□□□ 0.44
SYNE4Q8N205 RPS23-204ENST00000507980 836 ntTSL 2 BASIC17.8■□□□□ 0.44
SYNE4Q8N205 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC17.8■□□□□ 0.44
SYNE4Q8N205 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SYNE4Q8N205 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC17.8■□□□□ 0.44
SYNE4Q8N205 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SYNE4Q8N205 HELLS-212ENST00000630929 400 ntTSL 5 BASIC17.8■□□□□ 0.44
SYNE4Q8N205 AL451007.2-201ENST00000632004 563 ntBASIC17.8■□□□□ 0.44
SYNE4Q8N205 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
SYNE4Q8N205 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
SYNE4Q8N205 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SYNE4Q8N205 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SYNE4Q8N205 BANP-201ENST00000286122 2368 ntTSL 5 BASIC17.8■□□□□ 0.44
SYNE4Q8N205 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
SYNE4Q8N205 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC17.8■□□□□ 0.44
SYNE4Q8N205 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
SYNE4Q8N205 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE4Q8N205 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE4Q8N205 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE4Q8N205 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE4Q8N205 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
SYNE4Q8N205 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC17.79■□□□□ 0.44
SYNE4Q8N205 AL022313.4-201ENST00000562756 2046 ntBASIC17.79■□□□□ 0.44
SYNE4Q8N205 TEKT4P2-202ENST00000559466 1312 ntBASIC17.79■□□□□ 0.44
SYNE4Q8N205 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE4Q8N205 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE4Q8N205 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE4Q8N205 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SYNE4Q8N205 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms