Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC15.29■□□□□ 0.04
LHX1P48742 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC15.29■□□□□ 0.04
LHX1P48742 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC15.29■□□□□ 0.04
LHX1P48742 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC15.29■□□□□ 0.04
LHX1P48742 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC15.29■□□□□ 0.04
LHX1P48742 RN7SL277P-201ENST00000481521 288 ntBASIC15.29■□□□□ 0.04
LHX1P48742 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC15.29■□□□□ 0.04
LHX1P48742 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 RHOQP1-201ENST00000555758 579 ntBASIC15.29■□□□□ 0.04
LHX1P48742 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC15.29■□□□□ 0.04
LHX1P48742 KRT8P1-201ENST00000557533 1207 ntBASIC15.29■□□□□ 0.04
LHX1P48742 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC15.29■□□□□ 0.04
LHX1P48742 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC15.29■□□□□ 0.04
LHX1P48742 AL109837.1-201ENST00000603272 613 ntBASIC15.29■□□□□ 0.04
LHX1P48742 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
LHX1P48742 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC15.29■□□□□ 0.04
LHX1P48742 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
LHX1P48742 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC15.29■□□□□ 0.04
LHX1P48742 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC15.29■□□□□ 0.04
LHX1P48742 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC15.29■□□□□ 0.04
LHX1P48742 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.29■□□□□ 0.04
LHX1P48742 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.29■□□□□ 0.04
LHX1P48742 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC15.29■□□□□ 0.04
LHX1P48742 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC15.29■□□□□ 0.04
LHX1P48742 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
LHX1P48742 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LHX1P48742 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LHX1P48742 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC15.28■□□□□ 0.04
LHX1P48742 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC15.28■□□□□ 0.04
LHX1P48742 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
LHX1P48742 TBC1D3J-201ENST00000620719 1426 ntBASIC15.28■□□□□ 0.04
LHX1P48742 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC15.28■□□□□ 0.04
LHX1P48742 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC15.28■□□□□ 0.04
LHX1P48742 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LHX1P48742 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC15.28■□□□□ 0.04
LHX1P48742 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
LHX1P48742 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
LHX1P48742 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LHX1P48742 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC15.28■□□□□ 0.04
LHX1P48742 AC103702.1-201ENST00000548801 2630 ntBASIC15.28■□□□□ 0.04
LHX1P48742 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.28■□□□□ 0.04
LHX1P48742 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LHX1P48742 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
LHX1P48742 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC15.28■□□□□ 0.04
LHX1P48742 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
LHX1P48742 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LHX1P48742 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
LHX1P48742 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC15.28■□□□□ 0.04
LHX1P48742 HLA-DQB2-229ENST00000411527 1059 ntBASIC15.28■□□□□ 0.04
LHX1P48742 PARVG-202ENST00000415224 999 ntTSL 2 BASIC15.28■□□□□ 0.04
LHX1P48742 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC15.28■□□□□ 0.04
LHX1P48742 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LHX1P48742 RPSAP15-201ENST00000448168 861 ntBASIC15.28■□□□□ 0.04
LHX1P48742 AC234782.1-201ENST00000451950 919 ntBASIC15.28■□□□□ 0.04
LHX1P48742 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC15.28■□□□□ 0.04
LHX1P48742 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC15.28■□□□□ 0.04
LHX1P48742 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC15.28■□□□□ 0.04
LHX1P48742 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC15.28■□□□□ 0.04
LHX1P48742 ARL16-210ENST00000574938 751 ntTSL 2 BASIC15.28■□□□□ 0.04
LHX1P48742 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC15.28■□□□□ 0.04
LHX1P48742 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
LHX1P48742 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC15.28■□□□□ 0.04
LHX1P48742 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC15.28■□□□□ 0.04
LHX1P48742 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC15.28■□□□□ 0.04
LHX1P48742 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LHX1P48742 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LHX1P48742 ABR-205ENST00000544583 5595 ntTSL 2 BASIC15.28■□□□□ 0.04
LHX1P48742 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC15.28■□□□□ 0.04
LHX1P48742 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
LHX1P48742 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
LHX1P48742 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LHX1P48742 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LHX1P48742 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.28■□□□□ 0.04
LHX1P48742 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
LHX1P48742 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
LHX1P48742 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LHX1P48742 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LHX1P48742 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LHX1P48742 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LHX1P48742 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LHX1P48742 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.27■□□□□ 0.04
LHX1P48742 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
LHX1P48742 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms