Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A3P12111 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.48□□□□□ -0.09
COL6A3P12111 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC14.48□□□□□ -0.09
COL6A3P12111 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A3P12111 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A3P12111 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A3P12111 MCOLN3-201ENST00000341115 1762 ntTSL 2 BASIC14.48□□□□□ -0.09
COL6A3P12111 AL031056.1-202ENST00000635954 2193 ntTSL 5 BASIC14.48□□□□□ -0.09
COL6A3P12111 ZCCHC7-201ENST00000322831 1219 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A3P12111 RPSAP61-201ENST00000412542 878 ntBASIC14.48□□□□□ -0.09
COL6A3P12111 AP001331.1-201ENST00000413008 1015 ntBASIC14.48□□□□□ -0.09
COL6A3P12111 HMGN1P4-201ENST00000419500 290 ntBASIC14.48□□□□□ -0.09
COL6A3P12111 LINC00271-202ENST00000436554 655 ntTSL 5 BASIC14.48□□□□□ -0.09
COL6A3P12111 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A3P12111 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A3P12111 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
COL6A3P12111 GLB1-203ENST00000399402 2512 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
COL6A3P12111 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL6A3P12111 MTHFR-217ENST00000641820 1569 ntBASIC14.48□□□□□ -0.09
COL6A3P12111 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A3P12111 ZSCAN29-207ENST00000568898 1389 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A3P12111 C17orf80-202ENST00000268942 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A3P12111 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A3P12111 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A3P12111 AIMP2-203ENST00000400479 1107 ntTSL 5 BASIC14.47□□□□□ -0.09
COL6A3P12111 MRPS12-202ENST00000402029 929 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A3P12111 AL121983.2-204ENST00000430592 448 ntTSL 3 BASIC14.47□□□□□ -0.09
COL6A3P12111 IGFL1-201ENST00000437936 769 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A3P12111 AL354707.1-204ENST00000451142 846 ntTSL 2 BASIC14.47□□□□□ -0.09
COL6A3P12111 WISP1-205ENST00000519433 545 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A3P12111 SLC16A7-209ENST00000549465 537 ntTSL 3 BASIC14.47□□□□□ -0.09
COL6A3P12111 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC14.47□□□□□ -0.09
COL6A3P12111 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC14.47□□□□□ -0.09
COL6A3P12111 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.47□□□□□ -0.09
COL6A3P12111 WARS-232ENST00000556645 2508 ntTSL 5 BASIC14.47□□□□□ -0.09
COL6A3P12111 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC14.47□□□□□ -0.09
COL6A3P12111 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC14.47□□□□□ -0.09
COL6A3P12111 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A3P12111 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
COL6A3P12111 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC14.47□□□□□ -0.09
COL6A3P12111 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A3P12111 DMC1-207ENST00000616615 1595 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A3P12111 RANGRF-201ENST00000226105 1009 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A3P12111 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A3P12111 AC064853.1-201ENST00000413096 540 ntTSL 4 BASIC14.47□□□□□ -0.09
COL6A3P12111 RN7SL638P-201ENST00000494527 290 ntBASIC14.47□□□□□ -0.09
COL6A3P12111 AC003965.2-201ENST00000577140 265 ntTSL 3 BASIC14.47□□□□□ -0.09
COL6A3P12111 AC021146.12-201ENST00000608365 477 ntTSL 2 BASIC14.47□□□□□ -0.09
COL6A3P12111 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A3P12111 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A3P12111 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A3P12111 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
COL6A3P12111 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A3P12111 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
COL6A3P12111 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.47□□□□□ -0.09
COL6A3P12111 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
COL6A3P12111 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
COL6A3P12111 CCER1-201ENST00000358859 2962 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
COL6A3P12111 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL6A3P12111 RPLP1-202ENST00000357790 445 ntTSL 2 BASIC14.46□□□□□ -0.09
COL6A3P12111 ZNF451-205ENST00000370710 375 ntTSL 2 BASIC14.46□□□□□ -0.09
COL6A3P12111 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
COL6A3P12111 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC14.46□□□□□ -0.09
COL6A3P12111 MYLK-AS1-203ENST00000485162 587 ntTSL 4 BASIC14.46□□□□□ -0.09
COL6A3P12111 HDAC2-AS2-216ENST00000522844 808 ntTSL 5 BASIC14.46□□□□□ -0.09
COL6A3P12111 HNRNPA1P69-201ENST00000552536 933 ntBASIC14.46□□□□□ -0.09
COL6A3P12111 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
COL6A3P12111 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL6A3P12111 SIGLEC17P-204ENST00000618545 1517 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL6A3P12111 TUBD1-202ENST00000340993 1769 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL6A3P12111 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL6A3P12111 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL6A3P12111 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL6A3P12111 AL513477.1-201ENST00000602865 2407 ntBASIC14.46□□□□□ -0.09
COL6A3P12111 RPL13AP5-201ENST00000439189 612 ntBASIC14.46□□□□□ -0.09
COL6A3P12111 AC067942.2-201ENST00000506227 1268 ntBASIC14.46□□□□□ -0.09
COL6A3P12111 SNORA74.2-201ENST00000516496 180 ntBASIC14.46□□□□□ -0.09
COL6A3P12111 DDX11L8-201ENST00000535849 366 ntBASIC14.46□□□□□ -0.09
COL6A3P12111 AC121757.1-201ENST00000552441 624 ntTSL 5 BASIC14.46□□□□□ -0.09
COL6A3P12111 AC090825.2-201ENST00000557959 739 ntBASIC14.46□□□□□ -0.09
COL6A3P12111 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL6A3P12111 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC14.46□□□□□ -0.09
COL6A3P12111 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL6A3P12111 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL6A3P12111 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL6A3P12111 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
COL6A3P12111 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL6A3P12111 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
COL6A3P12111 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL6A3P12111 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL6A3P12111 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL6A3P12111 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC14.46□□□□□ -0.09
COL6A3P12111 DANT2-201ENST00000430756 2079 ntTSL 3 BASIC14.46□□□□□ -0.1
COL6A3P12111 FANK1-203ENST00000368693 1294 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
COL6A3P12111 NOS2P3-201ENST00000411468 867 ntBASIC14.46□□□□□ -0.1
COL6A3P12111 AC006001.3-205ENST00000428370 579 ntBASIC14.46□□□□□ -0.1
COL6A3P12111 HNRNPA1P9-201ENST00000450624 950 ntBASIC14.46□□□□□ -0.1
COL6A3P12111 SEMA6A-AS1-206ENST00000514214 782 ntTSL 3 BASIC14.46□□□□□ -0.1
COL6A3P12111 AC046168.2-202ENST00000561123 926 ntTSL 3 BASIC14.46□□□□□ -0.1
COL6A3P12111 ALOX12P1-201ENST00000579299 1229 ntBASIC14.46□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms