Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC11.74□□□□□ -0.53
HMGB3O15347 WDR31-201ENST00000341761 4862 ntAPPRIS P3 TSL 5 BASIC11.74□□□□□ -0.53
HMGB3O15347 WDR31-202ENST00000374193 4878 ntAPPRIS ALT1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HMGB3O15347 LAMA5-201ENST00000252999 11426 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HMGB3O15347 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HMGB3O15347 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC11.74□□□□□ -0.53
HMGB3O15347 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HMGB3O15347 TRIB1-201ENST00000311922 3635 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HMGB3O15347 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
HMGB3O15347 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HMGB3O15347 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HMGB3O15347 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
HMGB3O15347 RGS12-201ENST00000336727 4674 ntAPPRIS P4 TSL 1 (best) BASIC11.74□□□□□ -0.53
HMGB3O15347 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HMGB3O15347 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC11.74□□□□□ -0.53
HMGB3O15347 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC11.73□□□□□ -0.53
HMGB3O15347 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 COL8A1-201ENST00000261037 5705 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 PDE2A-218ENST00000540345 3027 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
HMGB3O15347 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC11.73□□□□□ -0.53
HMGB3O15347 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 HINT3-201ENST00000229633 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 AC012435.1-201ENST00000563287 3385 ntTSL 2 BASIC11.73□□□□□ -0.53
HMGB3O15347 PLD5-208ENST00000536534 8721 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 PLEC-206ENST00000357649 14689 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 RALGPS2-203ENST00000367634 7512 ntTSL 2 BASIC11.73□□□□□ -0.53
HMGB3O15347 HECTD4-202ENST00000377560 15759 ntAPPRIS P5 TSL 5 BASIC11.73□□□□□ -0.53
HMGB3O15347 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 SEZ6L-201ENST00000248933 3248 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 SON-201ENST00000300278 7477 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
HMGB3O15347 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC11.73□□□□□ -0.53
HMGB3O15347 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
HMGB3O15347 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC11.73□□□□□ -0.53
HMGB3O15347 PCDHA6-201ENST00000378126 3267 ntBASIC11.73□□□□□ -0.53
HMGB3O15347 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
HMGB3O15347 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC11.73□□□□□ -0.53
HMGB3O15347 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
HMGB3O15347 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
HMGB3O15347 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC11.73□□□□□ -0.53
HMGB3O15347 KRT18P43-201ENST00000469825 1281 ntBASIC11.73□□□□□ -0.53
HMGB3O15347 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC11.73□□□□□ -0.53
HMGB3O15347 AC069335.1-201ENST00000489972 472 ntBASIC11.73□□□□□ -0.53
HMGB3O15347 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC11.73□□□□□ -0.53
HMGB3O15347 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC11.73□□□□□ -0.53
HMGB3O15347 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC11.73□□□□□ -0.53
HMGB3O15347 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC11.73□□□□□ -0.53
HMGB3O15347 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC11.73□□□□□ -0.53
HMGB3O15347 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC11.73□□□□□ -0.53
HMGB3O15347 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC11.73□□□□□ -0.53
HMGB3O15347 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC11.73□□□□□ -0.53
HMGB3O15347 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC11.73□□□□□ -0.53
HMGB3O15347 AC074044.1-201ENST00000609673 707 ntBASIC11.73□□□□□ -0.53
HMGB3O15347 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC11.73□□□□□ -0.53
HMGB3O15347 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC11.73□□□□□ -0.53
HMGB3O15347 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 GPR39-203ENST00000622084 900 ntTSL 5 BASIC11.73□□□□□ -0.53
HMGB3O15347 AL157996.1-201ENST00000624684 2299 ntBASIC11.73□□□□□ -0.53
HMGB3O15347 SEZ6L-210ENST00000629590 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 SLC44A3-AS1-215ENST00000634870 5956 ntTSL 5 BASIC11.73□□□□□ -0.53
HMGB3O15347 TMEM56-201ENST00000370203 6822 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 ATAD2-201ENST00000287394 5565 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 RPH3A-202ENST00000415485 4452 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
HMGB3O15347 CCNY-203ENST00000374704 3960 ntAPPRIS P4 TSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 AC022497.1-201ENST00000624916 3691 ntBASIC11.73□□□□□ -0.53
HMGB3O15347 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 PDHA1-212ENST00000540249 3277 ntTSL 2 BASIC11.73□□□□□ -0.53
HMGB3O15347 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC11.73□□□□□ -0.53
HMGB3O15347 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 RBSN-207ENST00000476527 3005 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
HMGB3O15347 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HMGB3O15347 PLEKHA6-201ENST00000272203 7401 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HMGB3O15347 YLPM1-201ENST00000325680 7108 ntAPPRIS P2 TSL 5 BASIC11.72□□□□□ -0.53
HMGB3O15347 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC11.72□□□□□ -0.53
HMGB3O15347 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC11.72□□□□□ -0.53
HMGB3O15347 TTYH3-204ENST00000407643 4537 ntTSL 5 BASIC11.72□□□□□ -0.53
HMGB3O15347 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HMGB3O15347 AC072061.1-201ENST00000569710 2234 ntBASIC11.72□□□□□ -0.53
HMGB3O15347 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
HMGB3O15347 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
HMGB3O15347 HSPA8P5-201ENST00000456928 2069 ntBASIC11.72□□□□□ -0.53
HMGB3O15347 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
HMGB3O15347 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
HMGB3O15347 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms