Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NPHP1O15259 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NPHP1O15259 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC18.31■□□□□ 0.52
NPHP1O15259 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NPHP1O15259 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NPHP1O15259 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
NPHP1O15259 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NPHP1O15259 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
NPHP1O15259 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NPHP1O15259 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NPHP1O15259 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
NPHP1O15259 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
NPHP1O15259 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC18.3■□□□□ 0.52
NPHP1O15259 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NPHP1O15259 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC18.3■□□□□ 0.52
NPHP1O15259 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
NPHP1O15259 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
NPHP1O15259 AC004837.1-201ENST00000446267 564 ntBASIC18.3■□□□□ 0.52
NPHP1O15259 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC18.3■□□□□ 0.52
NPHP1O15259 FTH1P22-201ENST00000456305 520 ntBASIC18.3■□□□□ 0.52
NPHP1O15259 RHEB-207ENST00000496004 744 ntTSL 2 BASIC18.3■□□□□ 0.52
NPHP1O15259 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC18.3■□□□□ 0.52
NPHP1O15259 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC18.3■□□□□ 0.52
NPHP1O15259 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC18.3■□□□□ 0.52
NPHP1O15259 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC18.3■□□□□ 0.52
NPHP1O15259 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
NPHP1O15259 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC18.3■□□□□ 0.52
NPHP1O15259 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC18.3■□□□□ 0.52
NPHP1O15259 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
NPHP1O15259 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC18.3■□□□□ 0.52
NPHP1O15259 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
NPHP1O15259 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
NPHP1O15259 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NPHP1O15259 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC18.3■□□□□ 0.52
NPHP1O15259 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
NPHP1O15259 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
NPHP1O15259 AC073347.1-201ENST00000421633 2643 ntBASIC18.3■□□□□ 0.52
NPHP1O15259 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NPHP1O15259 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NPHP1O15259 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
NPHP1O15259 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NPHP1O15259 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC18.3■□□□□ 0.52
NPHP1O15259 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NPHP1O15259 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NPHP1O15259 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC18.29■□□□□ 0.52
NPHP1O15259 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
NPHP1O15259 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
NPHP1O15259 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
NPHP1O15259 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
NPHP1O15259 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
NPHP1O15259 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
NPHP1O15259 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NPHP1O15259 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
NPHP1O15259 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
NPHP1O15259 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NPHP1O15259 HIST2H2BA-201ENST00000412169 381 ntBASIC18.29■□□□□ 0.52
NPHP1O15259 NDUFS6P1-201ENST00000485187 316 ntBASIC18.29■□□□□ 0.52
NPHP1O15259 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
NPHP1O15259 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC18.29■□□□□ 0.52
NPHP1O15259 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC18.29■□□□□ 0.52
NPHP1O15259 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
NPHP1O15259 RN7SL470P-201ENST00000583069 259 ntBASIC18.29■□□□□ 0.52
NPHP1O15259 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC18.29■□□□□ 0.52
NPHP1O15259 AC005618.3-201ENST00000624928 458 ntBASIC18.29■□□□□ 0.52
NPHP1O15259 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
NPHP1O15259 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
NPHP1O15259 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
NPHP1O15259 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NPHP1O15259 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NPHP1O15259 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
NPHP1O15259 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
NPHP1O15259 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC18.29■□□□□ 0.52
NPHP1O15259 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
NPHP1O15259 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
NPHP1O15259 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC18.29■□□□□ 0.52
NPHP1O15259 AC126365.1-201ENST00000578585 1514 ntBASIC18.28■□□□□ 0.52
NPHP1O15259 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
NPHP1O15259 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NPHP1O15259 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NPHP1O15259 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NPHP1O15259 AC136621.1-201ENST00000624017 2304 ntBASIC18.28■□□□□ 0.52
NPHP1O15259 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC18.28■□□□□ 0.52
NPHP1O15259 AC092135.3-201ENST00000624151 1846 ntBASIC18.28■□□□□ 0.52
NPHP1O15259 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC18.28■□□□□ 0.52
NPHP1O15259 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NPHP1O15259 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
NPHP1O15259 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
NPHP1O15259 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
NPHP1O15259 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NPHP1O15259 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NPHP1O15259 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC18.28■□□□□ 0.52
NPHP1O15259 OR2R1P-201ENST00000441404 914 ntBASIC18.28■□□□□ 0.52
NPHP1O15259 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NPHP1O15259 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
NPHP1O15259 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC18.28■□□□□ 0.52
NPHP1O15259 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC18.28■□□□□ 0.52
NPHP1O15259 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC18.28■□□□□ 0.52
NPHP1O15259 AC138701.2-201ENST00000553634 226 ntBASIC18.28■□□□□ 0.52
NPHP1O15259 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NPHP1O15259 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms