Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
PCDHGA4Q9Y5G9 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
PCDHGA4Q9Y5G9 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
PCDHGA4Q9Y5G9 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PCDHGA4Q9Y5G9 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHGA4Q9Y5G9 AF131216.4-201ENST00000638924 1588 ntBASIC22.22■■□□□ 1.15
PCDHGA4Q9Y5G9 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHGA4Q9Y5G9 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC22.22■■□□□ 1.15
PCDHGA4Q9Y5G9 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC22.22■■□□□ 1.15
PCDHGA4Q9Y5G9 AC133561.4-201ENST00000566112 224 ntBASIC22.22■■□□□ 1.15
PCDHGA4Q9Y5G9 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
PCDHGA4Q9Y5G9 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHGA4Q9Y5G9 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHGA4Q9Y5G9 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHGA4Q9Y5G9 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHGA4Q9Y5G9 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC22.21■■□□□ 1.15
PCDHGA4Q9Y5G9 AK3-203ENST00000447596 705 ntTSL 2 BASIC22.21■■□□□ 1.15
PCDHGA4Q9Y5G9 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC22.21■■□□□ 1.15
PCDHGA4Q9Y5G9 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC22.21■■□□□ 1.15
PCDHGA4Q9Y5G9 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC22.21■■□□□ 1.15
PCDHGA4Q9Y5G9 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC22.21■■□□□ 1.15
PCDHGA4Q9Y5G9 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC22.2■■□□□ 1.15
PCDHGA4Q9Y5G9 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PCDHGA4Q9Y5G9 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
PCDHGA4Q9Y5G9 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC22.2■■□□□ 1.14
PCDHGA4Q9Y5G9 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PCDHGA4Q9Y5G9 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
PCDHGA4Q9Y5G9 TK2-202ENST00000417693 1046 ntTSL 2 BASIC22.2■■□□□ 1.14
PCDHGA4Q9Y5G9 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC22.2■■□□□ 1.14
PCDHGA4Q9Y5G9 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC22.2■■□□□ 1.14
PCDHGA4Q9Y5G9 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC22.2■■□□□ 1.14
PCDHGA4Q9Y5G9 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
PCDHGA4Q9Y5G9 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHGA4Q9Y5G9 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC22.19■■□□□ 1.14
PCDHGA4Q9Y5G9 AL512631.2-201ENST00000604634 923 ntBASIC22.19■■□□□ 1.14
PCDHGA4Q9Y5G9 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC22.19■■□□□ 1.14
PCDHGA4Q9Y5G9 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHGA4Q9Y5G9 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
PCDHGA4Q9Y5G9 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC22.18■■□□□ 1.14
PCDHGA4Q9Y5G9 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PCDHGA4Q9Y5G9 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
PCDHGA4Q9Y5G9 AL139125.2-201ENST00000623134 1869 ntBASIC22.18■■□□□ 1.14
PCDHGA4Q9Y5G9 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
PCDHGA4Q9Y5G9 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
PCDHGA4Q9Y5G9 QDPR-206ENST00000508623 601 ntTSL 3 BASIC22.18■■□□□ 1.14
PCDHGA4Q9Y5G9 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC22.18■■□□□ 1.14
PCDHGA4Q9Y5G9 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC22.18■■□□□ 1.14
PCDHGA4Q9Y5G9 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
PCDHGA4Q9Y5G9 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
PCDHGA4Q9Y5G9 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHGA4Q9Y5G9 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHGA4Q9Y5G9 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHGA4Q9Y5G9 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHGA4Q9Y5G9 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHGA4Q9Y5G9 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHGA4Q9Y5G9 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHGA4Q9Y5G9 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHGA4Q9Y5G9 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC22.17■■□□□ 1.14
PCDHGA4Q9Y5G9 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PCDHGA4Q9Y5G9 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHGA4Q9Y5G9 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHGA4Q9Y5G9 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHGA4Q9Y5G9 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC22.16■■□□□ 1.14
PCDHGA4Q9Y5G9 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHGA4Q9Y5G9 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHGA4Q9Y5G9 GUK1-205ENST00000366722 850 ntTSL 3 BASIC22.16■■□□□ 1.14
PCDHGA4Q9Y5G9 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC22.16■■□□□ 1.14
PCDHGA4Q9Y5G9 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHGA4Q9Y5G9 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC22.16■■□□□ 1.14
PCDHGA4Q9Y5G9 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHGA4Q9Y5G9 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC22.15■■□□□ 1.14
PCDHGA4Q9Y5G9 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHGA4Q9Y5G9 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHGA4Q9Y5G9 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC22.15■■□□□ 1.14
PCDHGA4Q9Y5G9 CLTA-210ENST00000540080 989 ntTSL 2 BASIC22.15■■□□□ 1.14
PCDHGA4Q9Y5G9 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC22.15■■□□□ 1.14
PCDHGA4Q9Y5G9 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
PCDHGA4Q9Y5G9 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHGA4Q9Y5G9 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHGA4Q9Y5G9 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.14
PCDHGA4Q9Y5G9 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
PCDHGA4Q9Y5G9 CD72-202ENST00000378430 585 ntTSL 3 BASIC22.14■■□□□ 1.13
PCDHGA4Q9Y5G9 LBH-205ENST00000407930 756 ntTSL 2 BASIC22.14■■□□□ 1.13
PCDHGA4Q9Y5G9 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC22.14■■□□□ 1.13
PCDHGA4Q9Y5G9 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC22.14■■□□□ 1.13
PCDHGA4Q9Y5G9 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
PCDHGA4Q9Y5G9 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC22.14■■□□□ 1.13
PCDHGA4Q9Y5G9 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
PCDHGA4Q9Y5G9 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
PCDHGA4Q9Y5G9 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHGA4Q9Y5G9 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC22.13■■□□□ 1.13
PCDHGA4Q9Y5G9 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHGA4Q9Y5G9 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHGA4Q9Y5G9 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC22.13■■□□□ 1.13
PCDHGA4Q9Y5G9 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
PCDHGA4Q9Y5G9 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHGA4Q9Y5G9 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHGA4Q9Y5G9 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHGA4Q9Y5G9 EBPL-204ENST00000378272 766 ntTSL 3 BASIC22.12■■□□□ 1.13
PCDHGA4Q9Y5G9 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms