Protein–RNA interactions for Protein: Q9Y2I6

NINL, Ninein-like protein, humanhuman

Predictions only

Length 1,382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NINLQ9Y2I6 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
NINLQ9Y2I6 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC31.28■■■□□ 2.6
NINLQ9Y2I6 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
NINLQ9Y2I6 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
NINLQ9Y2I6 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
NINLQ9Y2I6 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC31.27■■■□□ 2.6
NINLQ9Y2I6 VGF-203ENST00000611537 1622 ntTSL 5 BASIC31.26■■■□□ 2.6
NINLQ9Y2I6 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
NINLQ9Y2I6 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC31.26■■■□□ 2.59
NINLQ9Y2I6 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC31.26■■■□□ 2.59
NINLQ9Y2I6 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC31.26■■■□□ 2.59
NINLQ9Y2I6 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
NINLQ9Y2I6 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
NINLQ9Y2I6 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC31.25■■■□□ 2.59
NINLQ9Y2I6 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC31.25■■■□□ 2.59
NINLQ9Y2I6 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
NINLQ9Y2I6 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
NINLQ9Y2I6 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
NINLQ9Y2I6 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC31.25■■■□□ 2.59
NINLQ9Y2I6 AL355001.2-201ENST00000620617 1191 ntBASIC31.25■■■□□ 2.59
NINLQ9Y2I6 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC31.25■■■□□ 2.59
NINLQ9Y2I6 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
NINLQ9Y2I6 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC31.25■■■□□ 2.59
NINLQ9Y2I6 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC31.24■■■□□ 2.59
NINLQ9Y2I6 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC31.24■■■□□ 2.59
NINLQ9Y2I6 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC31.23■■■□□ 2.59
NINLQ9Y2I6 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
NINLQ9Y2I6 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
NINLQ9Y2I6 PTMA-205ENST00000410064 814 ntTSL 2 BASIC31.23■■■□□ 2.59
NINLQ9Y2I6 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC31.23■■■□□ 2.59
NINLQ9Y2I6 AP001330.3-201ENST00000520123 633 ntBASIC31.23■■■□□ 2.59
NINLQ9Y2I6 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC31.23■■■□□ 2.59
NINLQ9Y2I6 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
NINLQ9Y2I6 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
NINLQ9Y2I6 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
NINLQ9Y2I6 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC31.22■■■□□ 2.59
NINLQ9Y2I6 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC31.22■■■□□ 2.59
NINLQ9Y2I6 AC142381.2-201ENST00000566120 298 ntBASIC31.22■■■□□ 2.59
NINLQ9Y2I6 NKILA-201ENST00000613231 537 ntTSL 4 BASIC31.22■■■□□ 2.59
NINLQ9Y2I6 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
NINLQ9Y2I6 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC31.22■■■□□ 2.59
NINLQ9Y2I6 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC31.22■■■□□ 2.59
NINLQ9Y2I6 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
NINLQ9Y2I6 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
NINLQ9Y2I6 MIR939-201ENST00000401314 82 ntBASIC31.21■■■□□ 2.59
NINLQ9Y2I6 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
NINLQ9Y2I6 MIR4767-201ENST00000582827 78 ntBASIC31.21■■■□□ 2.59
NINLQ9Y2I6 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC31.21■■■□□ 2.59
NINLQ9Y2I6 AC009086.3-201ENST00000623486 1008 ntBASIC31.21■■■□□ 2.59
NINLQ9Y2I6 AC141586.4-201ENST00000624558 1573 ntBASIC31.21■■■□□ 2.59
NINLQ9Y2I6 TMEM202-AS1-202ENST00000565181 2325 ntBASIC31.21■■■□□ 2.59
NINLQ9Y2I6 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
NINLQ9Y2I6 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC31.21■■■□□ 2.59
NINLQ9Y2I6 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
NINLQ9Y2I6 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
NINLQ9Y2I6 AC136469.2-201ENST00000623944 1028 ntBASIC31.2■■■□□ 2.59
NINLQ9Y2I6 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC31.2■■■□□ 2.59
NINLQ9Y2I6 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
NINLQ9Y2I6 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC31.2■■■□□ 2.58
NINLQ9Y2I6 AC006455.2-201ENST00000429931 906 ntBASIC31.19■■■□□ 2.58
NINLQ9Y2I6 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
NINLQ9Y2I6 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC31.19■■■□□ 2.58
NINLQ9Y2I6 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
NINLQ9Y2I6 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
NINLQ9Y2I6 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC31.18■■■□□ 2.58
NINLQ9Y2I6 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC31.18■■■□□ 2.58
NINLQ9Y2I6 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
NINLQ9Y2I6 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
NINLQ9Y2I6 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC31.18■■■□□ 2.58
NINLQ9Y2I6 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
NINLQ9Y2I6 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
NINLQ9Y2I6 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC31.18■■■□□ 2.58
NINLQ9Y2I6 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
NINLQ9Y2I6 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
NINLQ9Y2I6 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
NINLQ9Y2I6 EI24-213ENST00000618552 1747 ntTSL 5 BASIC31.17■■■□□ 2.58
NINLQ9Y2I6 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC31.17■■■□□ 2.58
NINLQ9Y2I6 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC31.17■■■□□ 2.58
NINLQ9Y2I6 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
NINLQ9Y2I6 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC31.17■■■□□ 2.58
NINLQ9Y2I6 AF213884.3-201ENST00000563833 479 ntBASIC31.17■■■□□ 2.58
NINLQ9Y2I6 GRAMD4P4-201ENST00000613563 1115 ntBASIC31.17■■■□□ 2.58
NINLQ9Y2I6 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC31.16■■■□□ 2.58
NINLQ9Y2I6 AC135731.1-201ENST00000569415 2548 ntBASIC31.16■■■□□ 2.58
NINLQ9Y2I6 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
NINLQ9Y2I6 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
NINLQ9Y2I6 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC31.16■■■□□ 2.58
NINLQ9Y2I6 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC31.16■■■□□ 2.58
NINLQ9Y2I6 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC31.16■■■□□ 2.58
NINLQ9Y2I6 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.58
NINLQ9Y2I6 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC31.16■■■□□ 2.58
NINLQ9Y2I6 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
NINLQ9Y2I6 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
NINLQ9Y2I6 AC091305.1-201ENST00000479476 895 ntBASIC31.15■■■□□ 2.58
NINLQ9Y2I6 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC31.15■■■□□ 2.58
NINLQ9Y2I6 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
NINLQ9Y2I6 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC31.15■■■□□ 2.58
NINLQ9Y2I6 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC31.14■■■□□ 2.58
NINLQ9Y2I6 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
NINLQ9Y2I6 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC31.14■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms