Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
FOXA2Q9Y261 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
FOXA2Q9Y261 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
FOXA2Q9Y261 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
FOXA2Q9Y261 AC079834.2-201ENST00000609776 1949 ntBASIC18.31■□□□□ 0.52
FOXA2Q9Y261 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
FOXA2Q9Y261 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
FOXA2Q9Y261 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
FOXA2Q9Y261 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
FOXA2Q9Y261 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
FOXA2Q9Y261 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
FOXA2Q9Y261 TK2-216ENST00000564917 1156 ntTSL 3 BASIC18.31■□□□□ 0.52
FOXA2Q9Y261 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
FOXA2Q9Y261 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
FOXA2Q9Y261 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
FOXA2Q9Y261 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
FOXA2Q9Y261 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
FOXA2Q9Y261 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXA2Q9Y261 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC18.3■□□□□ 0.52
FOXA2Q9Y261 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC18.3■□□□□ 0.52
FOXA2Q9Y261 DUSP8P3-201ENST00000399571 1760 ntBASIC18.3■□□□□ 0.52
FOXA2Q9Y261 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXA2Q9Y261 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXA2Q9Y261 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXA2Q9Y261 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC18.3■□□□□ 0.52
FOXA2Q9Y261 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
FOXA2Q9Y261 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
FOXA2Q9Y261 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
FOXA2Q9Y261 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXA2Q9Y261 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXA2Q9Y261 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXA2Q9Y261 MIR4281-201ENST00000580852 62 ntBASIC18.29■□□□□ 0.52
FOXA2Q9Y261 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXA2Q9Y261 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
FOXA2Q9Y261 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
FOXA2Q9Y261 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
FOXA2Q9Y261 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXA2Q9Y261 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
FOXA2Q9Y261 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
FOXA2Q9Y261 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
FOXA2Q9Y261 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
FOXA2Q9Y261 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
FOXA2Q9Y261 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
FOXA2Q9Y261 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC18.28■□□□□ 0.52
FOXA2Q9Y261 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
FOXA2Q9Y261 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC18.28■□□□□ 0.52
FOXA2Q9Y261 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
FOXA2Q9Y261 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC18.28■□□□□ 0.52
FOXA2Q9Y261 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
FOXA2Q9Y261 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
FOXA2Q9Y261 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
FOXA2Q9Y261 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
FOXA2Q9Y261 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
FOXA2Q9Y261 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
FOXA2Q9Y261 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
FOXA2Q9Y261 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
FOXA2Q9Y261 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
FOXA2Q9Y261 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
FOXA2Q9Y261 STK32C-205ENST00000456004 607 ntTSL 2 BASIC18.27■□□□□ 0.52
FOXA2Q9Y261 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC18.27■□□□□ 0.52
FOXA2Q9Y261 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC18.27■□□□□ 0.52
FOXA2Q9Y261 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC18.27■□□□□ 0.51
FOXA2Q9Y261 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC18.27■□□□□ 0.51
FOXA2Q9Y261 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA2Q9Y261 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA2Q9Y261 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
FOXA2Q9Y261 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA2Q9Y261 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA2Q9Y261 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXA2Q9Y261 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXA2Q9Y261 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
FOXA2Q9Y261 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXA2Q9Y261 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXA2Q9Y261 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC18.25■□□□□ 0.51
FOXA2Q9Y261 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
FOXA2Q9Y261 PRTG-204ENST00000561292 833 ntTSL 3 BASIC18.25■□□□□ 0.51
FOXA2Q9Y261 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXA2Q9Y261 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
FOXA2Q9Y261 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC18.25■□□□□ 0.51
FOXA2Q9Y261 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
FOXA2Q9Y261 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXA2Q9Y261 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC18.24■□□□□ 0.51
FOXA2Q9Y261 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC18.24■□□□□ 0.51
FOXA2Q9Y261 AC131274.2-201ENST00000580697 1507 ntBASIC18.24■□□□□ 0.51
FOXA2Q9Y261 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC18.24■□□□□ 0.51
FOXA2Q9Y261 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC18.24■□□□□ 0.51
FOXA2Q9Y261 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
FOXA2Q9Y261 ALDH1A3-203ENST00000557963 1670 ntBASIC18.24■□□□□ 0.51
FOXA2Q9Y261 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
FOXA2Q9Y261 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
FOXA2Q9Y261 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
FOXA2Q9Y261 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
FOXA2Q9Y261 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
FOXA2Q9Y261 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
FOXA2Q9Y261 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
FOXA2Q9Y261 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC18.23■□□□□ 0.51
FOXA2Q9Y261 AL451085.2-201ENST00000605085 799 ntBASIC18.23■□□□□ 0.51
FOXA2Q9Y261 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
FOXA2Q9Y261 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
FOXA2Q9Y261 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms