Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.15■□□□□ 0.82
COL12A1Q99715 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL12A1Q99715 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL12A1Q99715 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
COL12A1Q99715 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
COL12A1Q99715 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL12A1Q99715 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
COL12A1Q99715 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL12A1Q99715 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
COL12A1Q99715 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL12A1Q99715 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.14■□□□□ 0.81
COL12A1Q99715 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL12A1Q99715 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL12A1Q99715 GPX1P1-201ENST00000388829 606 ntBASIC20.13■□□□□ 0.81
COL12A1Q99715 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.13■□□□□ 0.81
COL12A1Q99715 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.13■□□□□ 0.81
COL12A1Q99715 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.13■□□□□ 0.81
COL12A1Q99715 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
COL12A1Q99715 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL12A1Q99715 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL12A1Q99715 AC142472.1-201ENST00000612013 1741 ntBASIC20.13■□□□□ 0.81
COL12A1Q99715 MIR663A-201ENST00000385250 93 ntBASIC20.13■□□□□ 0.81
COL12A1Q99715 AC006970.2-201ENST00000450065 779 ntBASIC20.13■□□□□ 0.81
COL12A1Q99715 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
COL12A1Q99715 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC20.13■□□□□ 0.81
COL12A1Q99715 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.13■□□□□ 0.81
COL12A1Q99715 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.13■□□□□ 0.81
COL12A1Q99715 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL12A1Q99715 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC20.12■□□□□ 0.81
COL12A1Q99715 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC20.12■□□□□ 0.81
COL12A1Q99715 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL12A1Q99715 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.12■□□□□ 0.81
COL12A1Q99715 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.12■□□□□ 0.81
COL12A1Q99715 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
COL12A1Q99715 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL12A1Q99715 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
COL12A1Q99715 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.11■□□□□ 0.81
COL12A1Q99715 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.11■□□□□ 0.81
COL12A1Q99715 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.11■□□□□ 0.81
COL12A1Q99715 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL12A1Q99715 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL12A1Q99715 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL12A1Q99715 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC20.11■□□□□ 0.81
COL12A1Q99715 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL12A1Q99715 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL12A1Q99715 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
COL12A1Q99715 AC012414.1-201ENST00000556676 535 ntBASIC20.11■□□□□ 0.81
COL12A1Q99715 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL12A1Q99715 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC20.11■□□□□ 0.81
COL12A1Q99715 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
COL12A1Q99715 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
COL12A1Q99715 AC137761.2-201ENST00000561729 223 ntBASIC20.1■□□□□ 0.81
COL12A1Q99715 AC145350.3-201ENST00000569033 163 ntBASIC20.1■□□□□ 0.81
COL12A1Q99715 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL12A1Q99715 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL12A1Q99715 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL12A1Q99715 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.1■□□□□ 0.81
COL12A1Q99715 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.1■□□□□ 0.81
COL12A1Q99715 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC20.09■□□□□ 0.81
COL12A1Q99715 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.09■□□□□ 0.81
COL12A1Q99715 AC087239.1-201ENST00000622671 572 ntBASIC20.09■□□□□ 0.81
COL12A1Q99715 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC20.09■□□□□ 0.81
COL12A1Q99715 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL12A1Q99715 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
COL12A1Q99715 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
COL12A1Q99715 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.09■□□□□ 0.81
COL12A1Q99715 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.09■□□□□ 0.81
COL12A1Q99715 AC126544.1-201ENST00000580842 1059 ntBASIC20.09■□□□□ 0.81
COL12A1Q99715 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL12A1Q99715 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.09■□□□□ 0.81
COL12A1Q99715 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.08■□□□□ 0.81
COL12A1Q99715 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
COL12A1Q99715 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL12A1Q99715 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
COL12A1Q99715 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL12A1Q99715 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.08■□□□□ 0.81
COL12A1Q99715 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC20.08■□□□□ 0.81
COL12A1Q99715 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
COL12A1Q99715 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC20.08■□□□□ 0.8
COL12A1Q99715 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC20.07■□□□□ 0.8
COL12A1Q99715 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.07■□□□□ 0.8
COL12A1Q99715 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC20.07■□□□□ 0.8
COL12A1Q99715 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC20.07■□□□□ 0.8
COL12A1Q99715 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL12A1Q99715 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL12A1Q99715 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL12A1Q99715 PRORSD1P-201ENST00000295112 541 ntBASIC20.06■□□□□ 0.8
COL12A1Q99715 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL12A1Q99715 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC20.06■□□□□ 0.8
COL12A1Q99715 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL12A1Q99715 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
COL12A1Q99715 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.06■□□□□ 0.8
COL12A1Q99715 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL12A1Q99715 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC20.06■□□□□ 0.8
COL12A1Q99715 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL12A1Q99715 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC20.06■□□□□ 0.8
COL12A1Q99715 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.06■□□□□ 0.8
COL12A1Q99715 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC20.06■□□□□ 0.8
COL12A1Q99715 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL12A1Q99715 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms