Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC24.8■■□□□ 1.56
LRCH3Q96II8 NCF1B-203ENST00000435988 1254 ntBASIC24.8■■□□□ 1.56
LRCH3Q96II8 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC24.8■■□□□ 1.56
LRCH3Q96II8 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC24.8■■□□□ 1.56
LRCH3Q96II8 AC241377.3-202ENST00000626088 1088 ntBASIC24.8■■□□□ 1.56
LRCH3Q96II8 AC241585.3-202ENST00000628937 1088 ntBASIC24.8■■□□□ 1.56
LRCH3Q96II8 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC24.8■■□□□ 1.56
LRCH3Q96II8 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC24.8■■□□□ 1.56
LRCH3Q96II8 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
LRCH3Q96II8 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
LRCH3Q96II8 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC24.79■■□□□ 1.56
LRCH3Q96II8 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
LRCH3Q96II8 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
LRCH3Q96II8 NT5C3AP1-201ENST00000394500 1012 ntBASIC24.79■■□□□ 1.56
LRCH3Q96II8 AICDA-202ENST00000537228 667 ntTSL 5 BASIC24.79■■□□□ 1.56
LRCH3Q96II8 AC137761.2-201ENST00000561729 223 ntBASIC24.79■■□□□ 1.56
LRCH3Q96II8 AC145350.3-201ENST00000569033 163 ntBASIC24.79■■□□□ 1.56
LRCH3Q96II8 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
LRCH3Q96II8 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
LRCH3Q96II8 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC24.78■■□□□ 1.56
LRCH3Q96II8 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
LRCH3Q96II8 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC24.78■■□□□ 1.56
LRCH3Q96II8 KRT18P61-201ENST00000585825 1298 ntBASIC24.78■■□□□ 1.56
LRCH3Q96II8 WT1-AS_3.1-201ENST00000613262 234 ntBASIC24.78■■□□□ 1.56
LRCH3Q96II8 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
LRCH3Q96II8 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC24.78■■□□□ 1.56
LRCH3Q96II8 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC24.78■■□□□ 1.56
LRCH3Q96II8 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
LRCH3Q96II8 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
LRCH3Q96II8 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
LRCH3Q96II8 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
LRCH3Q96II8 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC24.77■■□□□ 1.56
LRCH3Q96II8 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC24.77■■□□□ 1.56
LRCH3Q96II8 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
LRCH3Q96II8 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC24.77■■□□□ 1.56
LRCH3Q96II8 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC24.76■■□□□ 1.55
LRCH3Q96II8 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
LRCH3Q96II8 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
LRCH3Q96II8 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
LRCH3Q96II8 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC24.76■■□□□ 1.55
LRCH3Q96II8 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC24.76■■□□□ 1.55
LRCH3Q96II8 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
LRCH3Q96II8 GAS2L1P2-201ENST00000436355 1356 ntBASIC24.76■■□□□ 1.55
LRCH3Q96II8 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
LRCH3Q96II8 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
LRCH3Q96II8 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
LRCH3Q96II8 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
LRCH3Q96II8 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC24.75■■□□□ 1.55
LRCH3Q96II8 MIR4651-201ENST00000582622 73 ntBASIC24.75■■□□□ 1.55
LRCH3Q96II8 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC24.75■■□□□ 1.55
LRCH3Q96II8 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC24.75■■□□□ 1.55
LRCH3Q96II8 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC24.75■■□□□ 1.55
LRCH3Q96II8 C17orf82-201ENST00000623772 1530 ntBASIC24.75■■□□□ 1.55
LRCH3Q96II8 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
LRCH3Q96II8 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC24.74■■□□□ 1.55
LRCH3Q96II8 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC24.74■■□□□ 1.55
LRCH3Q96II8 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
LRCH3Q96II8 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
LRCH3Q96II8 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC24.74■■□□□ 1.55
LRCH3Q96II8 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC24.74■■□□□ 1.55
LRCH3Q96II8 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
LRCH3Q96II8 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC24.74■■□□□ 1.55
LRCH3Q96II8 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
LRCH3Q96II8 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
LRCH3Q96II8 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC24.73■■□□□ 1.55
LRCH3Q96II8 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
LRCH3Q96II8 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC24.73■■□□□ 1.55
LRCH3Q96II8 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC24.73■■□□□ 1.55
LRCH3Q96II8 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
LRCH3Q96II8 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
LRCH3Q96II8 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC24.73■■□□□ 1.55
LRCH3Q96II8 AC009086.3-201ENST00000623486 1008 ntBASIC24.73■■□□□ 1.55
LRCH3Q96II8 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC24.72■■□□□ 1.55
LRCH3Q96II8 IGHV3-19-201ENST00000521488 291 ntBASIC24.72■■□□□ 1.55
LRCH3Q96II8 KRT18P6-201ENST00000555540 1265 ntBASIC24.72■■□□□ 1.55
LRCH3Q96II8 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
LRCH3Q96II8 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC24.72■■□□□ 1.55
LRCH3Q96II8 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC24.71■■□□□ 1.55
LRCH3Q96II8 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
LRCH3Q96II8 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC24.71■■□□□ 1.55
LRCH3Q96II8 AC008687.6-201ENST00000596318 630 ntBASIC24.71■■□□□ 1.55
LRCH3Q96II8 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
LRCH3Q96II8 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
LRCH3Q96II8 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.55
LRCH3Q96II8 AC142472.1-201ENST00000612013 1741 ntBASIC24.7■■□□□ 1.54
LRCH3Q96II8 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
LRCH3Q96II8 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
LRCH3Q96II8 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
LRCH3Q96II8 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC24.69■■□□□ 1.54
LRCH3Q96II8 PROC-203ENST00000409048 1586 ntTSL 5 BASIC24.69■■□□□ 1.54
LRCH3Q96II8 STX7-201ENST00000367937 1090 ntTSL 5 BASIC24.69■■□□□ 1.54
LRCH3Q96II8 GPX1P1-201ENST00000388829 606 ntBASIC24.69■■□□□ 1.54
LRCH3Q96II8 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
LRCH3Q96II8 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC24.69■■□□□ 1.54
LRCH3Q96II8 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC24.69■■□□□ 1.54
LRCH3Q96II8 BID-214ENST00000617586 542 ntTSL 5 BASIC24.69■■□□□ 1.54
LRCH3Q96II8 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
LRCH3Q96II8 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
LRCH3Q96II8 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
LRCH3Q96II8 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms