Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC21.74■■□□□ 1.07
VPS33AQ96AX1 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC21.74■■□□□ 1.07
VPS33AQ96AX1 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS33AQ96AX1 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS33AQ96AX1 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.74■■□□□ 1.07
VPS33AQ96AX1 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
VPS33AQ96AX1 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
VPS33AQ96AX1 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC21.74■■□□□ 1.07
VPS33AQ96AX1 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS33AQ96AX1 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.73■■□□□ 1.07
VPS33AQ96AX1 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
VPS33AQ96AX1 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC21.73■■□□□ 1.07
VPS33AQ96AX1 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
VPS33AQ96AX1 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS33AQ96AX1 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
VPS33AQ96AX1 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC21.73■■□□□ 1.07
VPS33AQ96AX1 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VPS33AQ96AX1 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VPS33AQ96AX1 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS33AQ96AX1 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.72■■□□□ 1.07
VPS33AQ96AX1 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
VPS33AQ96AX1 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS33AQ96AX1 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.72■■□□□ 1.07
VPS33AQ96AX1 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS33AQ96AX1 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS33AQ96AX1 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS33AQ96AX1 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.71■■□□□ 1.07
VPS33AQ96AX1 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC21.71■■□□□ 1.07
VPS33AQ96AX1 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS33AQ96AX1 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS33AQ96AX1 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS33AQ96AX1 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS33AQ96AX1 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS33AQ96AX1 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS33AQ96AX1 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.71■■□□□ 1.07
VPS33AQ96AX1 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.71■■□□□ 1.07
VPS33AQ96AX1 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.7■■□□□ 1.07
VPS33AQ96AX1 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.07
VPS33AQ96AX1 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
VPS33AQ96AX1 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS33AQ96AX1 AL022069.1-201ENST00000568025 1636 ntBASIC21.7■■□□□ 1.06
VPS33AQ96AX1 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS33AQ96AX1 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS33AQ96AX1 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
VPS33AQ96AX1 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VPS33AQ96AX1 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC21.7■■□□□ 1.06
VPS33AQ96AX1 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VPS33AQ96AX1 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VPS33AQ96AX1 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS33AQ96AX1 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
VPS33AQ96AX1 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
VPS33AQ96AX1 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
VPS33AQ96AX1 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS33AQ96AX1 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
VPS33AQ96AX1 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS33AQ96AX1 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS33AQ96AX1 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
VPS33AQ96AX1 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
VPS33AQ96AX1 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS33AQ96AX1 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS33AQ96AX1 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC21.68■■□□□ 1.06
VPS33AQ96AX1 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS33AQ96AX1 LONRF2P2-201ENST00000439212 571 ntBASIC21.68■■□□□ 1.06
VPS33AQ96AX1 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS33AQ96AX1 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS33AQ96AX1 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS33AQ96AX1 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS33AQ96AX1 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
VPS33AQ96AX1 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS33AQ96AX1 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.67■■□□□ 1.06
VPS33AQ96AX1 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS33AQ96AX1 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS33AQ96AX1 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
VPS33AQ96AX1 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
VPS33AQ96AX1 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS33AQ96AX1 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS33AQ96AX1 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS33AQ96AX1 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS33AQ96AX1 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS33AQ96AX1 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VPS33AQ96AX1 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.66■■□□□ 1.06
VPS33AQ96AX1 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS33AQ96AX1 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.66■■□□□ 1.06
VPS33AQ96AX1 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.65■■□□□ 1.06
VPS33AQ96AX1 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS33AQ96AX1 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS33AQ96AX1 LINC00565-201ENST00000562710 2331 ntBASIC21.65■■□□□ 1.06
VPS33AQ96AX1 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS33AQ96AX1 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.65■■□□□ 1.06
VPS33AQ96AX1 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.65■■□□□ 1.06
VPS33AQ96AX1 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
VPS33AQ96AX1 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
VPS33AQ96AX1 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS33AQ96AX1 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
VPS33AQ96AX1 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VPS33AQ96AX1 AC131274.2-201ENST00000580697 1507 ntBASIC21.65■■□□□ 1.06
VPS33AQ96AX1 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
VPS33AQ96AX1 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.64■■□□□ 1.06
VPS33AQ96AX1 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
VPS33AQ96AX1 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms