Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AC241585.3-202ENST00000628937 1088 ntBASIC30.23■■■□□ 2.43
USHBP1Q8N6Y0 AC245100.8-202ENST00000629247 1058 ntBASIC30.23■■■□□ 2.43
USHBP1Q8N6Y0 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC30.23■■■□□ 2.43
USHBP1Q8N6Y0 AC135731.1-201ENST00000569415 2548 ntBASIC30.23■■■□□ 2.43
USHBP1Q8N6Y0 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
USHBP1Q8N6Y0 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
USHBP1Q8N6Y0 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC30.22■■■□□ 2.43
USHBP1Q8N6Y0 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
USHBP1Q8N6Y0 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC30.22■■■□□ 2.43
USHBP1Q8N6Y0 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC30.22■■■□□ 2.43
USHBP1Q8N6Y0 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
USHBP1Q8N6Y0 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
USHBP1Q8N6Y0 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
USHBP1Q8N6Y0 IRS3P-201ENST00000223076 1006 ntBASIC30.21■■■□□ 2.43
USHBP1Q8N6Y0 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
USHBP1Q8N6Y0 AL162430.1-201ENST00000480705 870 ntBASIC30.21■■■□□ 2.43
USHBP1Q8N6Y0 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC30.21■■■□□ 2.43
USHBP1Q8N6Y0 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC30.21■■■□□ 2.43
USHBP1Q8N6Y0 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
USHBP1Q8N6Y0 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
USHBP1Q8N6Y0 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC30.2■■■□□ 2.43
USHBP1Q8N6Y0 JTB-203ENST00000368589 1216 ntTSL 2 BASIC30.2■■■□□ 2.43
USHBP1Q8N6Y0 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC30.2■■■□□ 2.43
USHBP1Q8N6Y0 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC30.2■■■□□ 2.43
USHBP1Q8N6Y0 VGF-203ENST00000611537 1622 ntTSL 5 BASIC30.2■■■□□ 2.43
USHBP1Q8N6Y0 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC30.2■■■□□ 2.42
USHBP1Q8N6Y0 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
USHBP1Q8N6Y0 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
USHBP1Q8N6Y0 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC30.2■■■□□ 2.42
USHBP1Q8N6Y0 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
USHBP1Q8N6Y0 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
USHBP1Q8N6Y0 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC30.19■■■□□ 2.42
USHBP1Q8N6Y0 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
USHBP1Q8N6Y0 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
USHBP1Q8N6Y0 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
USHBP1Q8N6Y0 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
USHBP1Q8N6Y0 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
USHBP1Q8N6Y0 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC30.18■■■□□ 2.42
USHBP1Q8N6Y0 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC30.18■■■□□ 2.42
USHBP1Q8N6Y0 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
USHBP1Q8N6Y0 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC30.17■■■□□ 2.42
USHBP1Q8N6Y0 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
USHBP1Q8N6Y0 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
USHBP1Q8N6Y0 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
USHBP1Q8N6Y0 AC233992.3-201ENST00000607491 485 ntBASIC30.16■■■□□ 2.42
USHBP1Q8N6Y0 pRNA.6-201ENST00000610482 90 ntBASIC30.16■■■□□ 2.42
USHBP1Q8N6Y0 pRNA.5-201ENST00000612139 90 ntBASIC30.16■■■□□ 2.42
USHBP1Q8N6Y0 pRNA.11-201ENST00000618423 90 ntBASIC30.16■■■□□ 2.42
USHBP1Q8N6Y0 pRNA.13-201ENST00000619112 90 ntBASIC30.16■■■□□ 2.42
USHBP1Q8N6Y0 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
USHBP1Q8N6Y0 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
USHBP1Q8N6Y0 PARL-206ENST00000435888 1098 ntTSL 5 BASIC30.15■■■□□ 2.42
USHBP1Q8N6Y0 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC30.15■■■□□ 2.42
USHBP1Q8N6Y0 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC30.15■■■□□ 2.42
USHBP1Q8N6Y0 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC30.15■■■□□ 2.42
USHBP1Q8N6Y0 GTSE1-AS1-202ENST00000623117 1518 ntBASIC30.15■■■□□ 2.42
USHBP1Q8N6Y0 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC30.14■■■□□ 2.42
USHBP1Q8N6Y0 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC30.14■■■□□ 2.42
USHBP1Q8N6Y0 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC30.14■■■□□ 2.42
USHBP1Q8N6Y0 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC30.14■■■□□ 2.42
USHBP1Q8N6Y0 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC30.14■■■□□ 2.42
USHBP1Q8N6Y0 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC30.14■■■□□ 2.42
USHBP1Q8N6Y0 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC30.14■■■□□ 2.41
USHBP1Q8N6Y0 ALDH1A3-203ENST00000557963 1670 ntBASIC30.14■■■□□ 2.41
USHBP1Q8N6Y0 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
USHBP1Q8N6Y0 BX842568.3-201ENST00000418104 571 ntBASIC30.13■■■□□ 2.41
USHBP1Q8N6Y0 GRAMD4P2-201ENST00000423297 1097 ntBASIC30.13■■■□□ 2.41
USHBP1Q8N6Y0 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC30.13■■■□□ 2.41
USHBP1Q8N6Y0 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC30.13■■■□□ 2.41
USHBP1Q8N6Y0 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
USHBP1Q8N6Y0 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
USHBP1Q8N6Y0 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC30.12■■■□□ 2.41
USHBP1Q8N6Y0 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC30.12■■■□□ 2.41
USHBP1Q8N6Y0 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
USHBP1Q8N6Y0 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC30.12■■■□□ 2.41
USHBP1Q8N6Y0 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
USHBP1Q8N6Y0 SNX3-202ENST00000349379 890 ntTSL 2 BASIC30.11■■■□□ 2.41
USHBP1Q8N6Y0 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC30.11■■■□□ 2.41
USHBP1Q8N6Y0 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC30.11■■■□□ 2.41
USHBP1Q8N6Y0 SP2-202ENST00000613139 908 ntTSL 5 BASIC30.11■■■□□ 2.41
USHBP1Q8N6Y0 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC30.11■■■□□ 2.41
USHBP1Q8N6Y0 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC30.11■■■□□ 2.41
USHBP1Q8N6Y0 EI24-204ENST00000527235 1625 ntTSL 5 BASIC30.11■■■□□ 2.41
USHBP1Q8N6Y0 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
USHBP1Q8N6Y0 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
USHBP1Q8N6Y0 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
USHBP1Q8N6Y0 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC30.1■■■□□ 2.41
USHBP1Q8N6Y0 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC30.1■■■□□ 2.41
USHBP1Q8N6Y0 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
USHBP1Q8N6Y0 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC30.1■■■□□ 2.41
USHBP1Q8N6Y0 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
USHBP1Q8N6Y0 AC022211.4-201ENST00000625094 2161 ntBASIC30.1■■■□□ 2.41
USHBP1Q8N6Y0 TMEM202-AS1-202ENST00000565181 2325 ntBASIC30.1■■■□□ 2.41
USHBP1Q8N6Y0 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC30.09■■■□□ 2.41
USHBP1Q8N6Y0 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
USHBP1Q8N6Y0 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC30.09■■■□□ 2.41
USHBP1Q8N6Y0 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
USHBP1Q8N6Y0 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC30.09■■■□□ 2.41
USHBP1Q8N6Y0 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
USHBP1Q8N6Y0 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms