Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC28AQ8IWP9 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC28AQ8IWP9 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.87■□□□□ 0.61
CCDC28AQ8IWP9 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28AQ8IWP9 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28AQ8IWP9 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28AQ8IWP9 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28AQ8IWP9 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
CCDC28AQ8IWP9 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28AQ8IWP9 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28AQ8IWP9 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28AQ8IWP9 AC108673.1-201ENST00000510422 1159 ntBASIC18.86■□□□□ 0.61
CCDC28AQ8IWP9 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28AQ8IWP9 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28AQ8IWP9 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC28AQ8IWP9 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
CCDC28AQ8IWP9 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC28AQ8IWP9 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC28AQ8IWP9 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC28AQ8IWP9 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
CCDC28AQ8IWP9 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC28AQ8IWP9 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC28AQ8IWP9 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC28AQ8IWP9 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC28AQ8IWP9 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC28AQ8IWP9 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC28AQ8IWP9 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC28AQ8IWP9 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC28AQ8IWP9 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC28AQ8IWP9 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
CCDC28AQ8IWP9 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
CCDC28AQ8IWP9 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC28AQ8IWP9 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
CCDC28AQ8IWP9 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC28AQ8IWP9 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC28AQ8IWP9 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC28AQ8IWP9 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC28AQ8IWP9 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC28AQ8IWP9 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC28AQ8IWP9 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC28AQ8IWP9 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC28AQ8IWP9 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC28AQ8IWP9 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC28AQ8IWP9 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC28AQ8IWP9 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC18.83■□□□□ 0.6
CCDC28AQ8IWP9 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC28AQ8IWP9 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC28AQ8IWP9 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CCDC28AQ8IWP9 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC28AQ8IWP9 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC28AQ8IWP9 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC18.83■□□□□ 0.6
CCDC28AQ8IWP9 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.83■□□□□ 0.6
CCDC28AQ8IWP9 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC28AQ8IWP9 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC28AQ8IWP9 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC28AQ8IWP9 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC28AQ8IWP9 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC18.82■□□□□ 0.6
CCDC28AQ8IWP9 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC18.82■□□□□ 0.6
CCDC28AQ8IWP9 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC28AQ8IWP9 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC28AQ8IWP9 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC28AQ8IWP9 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC28AQ8IWP9 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC28AQ8IWP9 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
CCDC28AQ8IWP9 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC18.81■□□□□ 0.6
CCDC28AQ8IWP9 DUX4L28-201ENST00000623687 678 ntBASIC18.81■□□□□ 0.6
CCDC28AQ8IWP9 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC28AQ8IWP9 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC28AQ8IWP9 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC28AQ8IWP9 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC28AQ8IWP9 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
CCDC28AQ8IWP9 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC28AQ8IWP9 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC28AQ8IWP9 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CCDC28AQ8IWP9 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC28AQ8IWP9 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC28AQ8IWP9 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC28AQ8IWP9 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC28AQ8IWP9 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC28AQ8IWP9 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC28AQ8IWP9 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC28AQ8IWP9 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CCDC28AQ8IWP9 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC28AQ8IWP9 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CCDC28AQ8IWP9 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC28AQ8IWP9 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC28AQ8IWP9 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC28AQ8IWP9 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
CCDC28AQ8IWP9 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CCDC28AQ8IWP9 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC28AQ8IWP9 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC28AQ8IWP9 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC28AQ8IWP9 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC28AQ8IWP9 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC28AQ8IWP9 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC28AQ8IWP9 BID-212ENST00000614949 1988 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC28AQ8IWP9 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC28AQ8IWP9 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC28AQ8IWP9 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CCDC28AQ8IWP9 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms