Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC26.31■■□□□ 1.8
CCDC144BQ3MJ40 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CCDC144BQ3MJ40 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
CCDC144BQ3MJ40 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CCDC144BQ3MJ40 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
CCDC144BQ3MJ40 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC26.31■■□□□ 1.8
CCDC144BQ3MJ40 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC26.31■■□□□ 1.8
CCDC144BQ3MJ40 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CCDC144BQ3MJ40 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CCDC144BQ3MJ40 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC26.3■■□□□ 1.8
CCDC144BQ3MJ40 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC144BQ3MJ40 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC26.3■■□□□ 1.8
CCDC144BQ3MJ40 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC144BQ3MJ40 UNC93B3-201ENST00000308076 687 ntBASIC26.3■■□□□ 1.8
CCDC144BQ3MJ40 EBPL-204ENST00000378272 766 ntTSL 3 BASIC26.3■■□□□ 1.8
CCDC144BQ3MJ40 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
CCDC144BQ3MJ40 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC26.3■■□□□ 1.8
CCDC144BQ3MJ40 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC144BQ3MJ40 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
CCDC144BQ3MJ40 AP003733.4-201ENST00000623785 1697 ntBASIC26.29■■□□□ 1.8
CCDC144BQ3MJ40 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC26.29■■□□□ 1.8
CCDC144BQ3MJ40 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC144BQ3MJ40 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC144BQ3MJ40 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
CCDC144BQ3MJ40 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
CCDC144BQ3MJ40 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC26.28■■□□□ 1.8
CCDC144BQ3MJ40 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
CCDC144BQ3MJ40 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC144BQ3MJ40 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC26.28■■□□□ 1.8
CCDC144BQ3MJ40 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC26.28■■□□□ 1.8
CCDC144BQ3MJ40 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC144BQ3MJ40 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
CCDC144BQ3MJ40 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC144BQ3MJ40 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC26.27■■□□□ 1.8
CCDC144BQ3MJ40 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC144BQ3MJ40 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC144BQ3MJ40 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC144BQ3MJ40 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC144BQ3MJ40 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC144BQ3MJ40 ZNRF2P3-201ENST00000424200 374 ntBASIC26.27■■□□□ 1.8
CCDC144BQ3MJ40 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC26.27■■□□□ 1.8
CCDC144BQ3MJ40 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC26.27■■□□□ 1.8
CCDC144BQ3MJ40 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC144BQ3MJ40 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC144BQ3MJ40 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC144BQ3MJ40 SLC6A10P-202ENST00000431994 2058 ntBASIC26.27■■□□□ 1.8
CCDC144BQ3MJ40 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
CCDC144BQ3MJ40 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC26.26■■□□□ 1.79
CCDC144BQ3MJ40 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC26.26■■□□□ 1.79
CCDC144BQ3MJ40 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC144BQ3MJ40 GUK1-205ENST00000366722 850 ntTSL 3 BASIC26.26■■□□□ 1.79
CCDC144BQ3MJ40 AC142381.2-201ENST00000566120 298 ntBASIC26.26■■□□□ 1.79
CCDC144BQ3MJ40 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CCDC144BQ3MJ40 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC26.25■■□□□ 1.79
CCDC144BQ3MJ40 AL136162.1-201ENST00000607711 1078 ntBASIC26.25■■□□□ 1.79
CCDC144BQ3MJ40 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC26.25■■□□□ 1.79
CCDC144BQ3MJ40 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC26.24■■□□□ 1.79
CCDC144BQ3MJ40 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CCDC144BQ3MJ40 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC26.24■■□□□ 1.79
CCDC144BQ3MJ40 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC26.24■■□□□ 1.79
CCDC144BQ3MJ40 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC26.24■■□□□ 1.79
CCDC144BQ3MJ40 LINC00543-201ENST00000567234 1845 ntBASIC26.24■■□□□ 1.79
CCDC144BQ3MJ40 SRD5A1P1-201ENST00000442297 786 ntBASIC26.24■■□□□ 1.79
CCDC144BQ3MJ40 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
CCDC144BQ3MJ40 AC004448.1-201ENST00000458332 883 ntBASIC26.24■■□□□ 1.79
CCDC144BQ3MJ40 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
CCDC144BQ3MJ40 AL031432.3-201ENST00000607698 485 ntBASIC26.24■■□□□ 1.79
CCDC144BQ3MJ40 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
CCDC144BQ3MJ40 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC26.24■■□□□ 1.79
CCDC144BQ3MJ40 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CCDC144BQ3MJ40 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
CCDC144BQ3MJ40 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
CCDC144BQ3MJ40 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
CCDC144BQ3MJ40 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
CCDC144BQ3MJ40 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
CCDC144BQ3MJ40 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
CCDC144BQ3MJ40 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
CCDC144BQ3MJ40 SUDS3P1-201ENST00000505831 966 ntBASIC26.22■■□□□ 1.79
CCDC144BQ3MJ40 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC26.22■■□□□ 1.79
CCDC144BQ3MJ40 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CCDC144BQ3MJ40 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC26.21■■□□□ 1.79
CCDC144BQ3MJ40 AC135279.3-201ENST00000610945 1311 ntBASIC26.21■■□□□ 1.79
CCDC144BQ3MJ40 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
CCDC144BQ3MJ40 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC26.21■■□□□ 1.79
CCDC144BQ3MJ40 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC26.21■■□□□ 1.79
CCDC144BQ3MJ40 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC26.21■■□□□ 1.79
CCDC144BQ3MJ40 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC26.21■■□□□ 1.79
CCDC144BQ3MJ40 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
CCDC144BQ3MJ40 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CCDC144BQ3MJ40 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CCDC144BQ3MJ40 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.79
CCDC144BQ3MJ40 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
CCDC144BQ3MJ40 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
CCDC144BQ3MJ40 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC26.2■■□□□ 1.78
CCDC144BQ3MJ40 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
CCDC144BQ3MJ40 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC26.19■■□□□ 1.78
CCDC144BQ3MJ40 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC26.19■■□□□ 1.78
CCDC144BQ3MJ40 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CCDC144BQ3MJ40 AC024257.2-201ENST00000549699 147 ntBASIC26.19■■□□□ 1.78
CCDC144BQ3MJ40 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms