Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RPS28P62857 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RPS28P62857 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
RPS28P62857 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RPS28P62857 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RPS28P62857 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
RPS28P62857 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
RPS28P62857 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RPS28P62857 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC13.36□□□□□ -0.27
RPS28P62857 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
RPS28P62857 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
RPS28P62857 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC13.36□□□□□ -0.27
RPS28P62857 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RPS28P62857 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RPS28P62857 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
RPS28P62857 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RPS28P62857 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
RPS28P62857 AC141586.4-201ENST00000624558 1573 ntBASIC13.36□□□□□ -0.27
RPS28P62857 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC13.36□□□□□ -0.27
RPS28P62857 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RPS28P62857 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RPS28P62857 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC13.35□□□□□ -0.27
RPS28P62857 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RPS28P62857 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
RPS28P62857 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RPS28P62857 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RPS28P62857 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RPS28P62857 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RPS28P62857 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RPS28P62857 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
RPS28P62857 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
RPS28P62857 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC13.35□□□□□ -0.27
RPS28P62857 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RPS28P62857 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
RPS28P62857 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RPS28P62857 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC13.34□□□□□ -0.27
RPS28P62857 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RPS28P62857 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC13.34□□□□□ -0.27
RPS28P62857 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RPS28P62857 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC13.34□□□□□ -0.27
RPS28P62857 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
RPS28P62857 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RPS28P62857 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
RPS28P62857 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
RPS28P62857 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RPS28P62857 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
RPS28P62857 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
RPS28P62857 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
RPS28P62857 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
RPS28P62857 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
RPS28P62857 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC13.33□□□□□ -0.27
RPS28P62857 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.27
RPS28P62857 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RPS28P62857 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RPS28P62857 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
RPS28P62857 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RPS28P62857 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
RPS28P62857 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RPS28P62857 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RPS28P62857 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.28
RPS28P62857 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC13.33□□□□□ -0.28
RPS28P62857 AP004609.3-201ENST00000610705 1884 ntBASIC13.33□□□□□ -0.28
RPS28P62857 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RPS28P62857 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
RPS28P62857 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
RPS28P62857 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC13.32□□□□□ -0.28
RPS28P62857 BID-212ENST00000614949 1988 ntTSL 5 BASIC13.32□□□□□ -0.28
RPS28P62857 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RPS28P62857 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
RPS28P62857 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC13.32□□□□□ -0.28
RPS28P62857 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
RPS28P62857 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
RPS28P62857 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC13.32□□□□□ -0.28
RPS28P62857 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC13.32□□□□□ -0.28
RPS28P62857 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RPS28P62857 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RPS28P62857 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RPS28P62857 AC011270.2-201ENST00000624293 2550 ntBASIC13.31□□□□□ -0.28
RPS28P62857 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC13.31□□□□□ -0.28
RPS28P62857 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
RPS28P62857 AC120498.9-201ENST00000339021 3867 ntBASIC13.31□□□□□ -0.28
RPS28P62857 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RPS28P62857 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
RPS28P62857 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
RPS28P62857 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
RPS28P62857 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RPS28P62857 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC13.31□□□□□ -0.28
RPS28P62857 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC13.31□□□□□ -0.28
RPS28P62857 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RPS28P62857 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RPS28P62857 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RPS28P62857 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RPS28P62857 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
RPS28P62857 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
RPS28P62857 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC13.3□□□□□ -0.28
RPS28P62857 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RPS28P62857 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
RPS28P62857 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
RPS28P62857 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RPS28P62857 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms