Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 GUSBP5-201ENST00000418136 578 ntBASIC23.67■■□□□ 1.38
PTPN9P43378 TSPY9P-201ENST00000440215 945 ntBASIC23.67■■□□□ 1.38
PTPN9P43378 TSPY11P-201ENST00000442607 1045 ntBASIC23.67■■□□□ 1.38
PTPN9P43378 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC23.67■■□□□ 1.38
PTPN9P43378 EXOG-217ENST00000630638 197 ntTSL 5 BASIC23.67■■□□□ 1.38
PTPN9P43378 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
PTPN9P43378 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
PTPN9P43378 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
PTPN9P43378 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
PTPN9P43378 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
PTPN9P43378 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
PTPN9P43378 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
PTPN9P43378 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC23.66■■□□□ 1.38
PTPN9P43378 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
PTPN9P43378 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
PTPN9P43378 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
PTPN9P43378 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
PTPN9P43378 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC23.65■■□□□ 1.38
PTPN9P43378 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
PTPN9P43378 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC23.65■■□□□ 1.38
PTPN9P43378 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
PTPN9P43378 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
PTPN9P43378 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.38
PTPN9P43378 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
PTPN9P43378 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
PTPN9P43378 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.38
PTPN9P43378 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
PTPN9P43378 CD72-202ENST00000378430 585 ntTSL 3 BASIC23.64■■□□□ 1.37
PTPN9P43378 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC23.64■■□□□ 1.37
PTPN9P43378 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC23.64■■□□□ 1.37
PTPN9P43378 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC23.64■■□□□ 1.37
PTPN9P43378 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
PTPN9P43378 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
PTPN9P43378 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PTPN9P43378 LSM4-201ENST00000252816 986 ntTSL 2 BASIC23.63■■□□□ 1.37
PTPN9P43378 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
PTPN9P43378 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC23.63■■□□□ 1.37
PTPN9P43378 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
PTPN9P43378 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
PTPN9P43378 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
PTPN9P43378 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC23.63■■□□□ 1.37
PTPN9P43378 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
PTPN9P43378 ANOS2P-203ENST00000472227 1816 ntBASIC23.62■■□□□ 1.37
PTPN9P43378 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC23.62■■□□□ 1.37
PTPN9P43378 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
PTPN9P43378 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
PTPN9P43378 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
PTPN9P43378 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
PTPN9P43378 TFPT-201ENST00000391757 774 ntTSL 5 BASIC23.61■■□□□ 1.37
PTPN9P43378 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
PTPN9P43378 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC23.61■■□□□ 1.37
PTPN9P43378 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC23.61■■□□□ 1.37
PTPN9P43378 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
PTPN9P43378 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
PTPN9P43378 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
PTPN9P43378 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
PTPN9P43378 AC092068.2-201ENST00000590491 1708 ntBASIC23.6■■□□□ 1.37
PTPN9P43378 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
PTPN9P43378 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
PTPN9P43378 H19-210ENST00000439725 1929 ntTSL 2 BASIC23.6■■□□□ 1.37
PTPN9P43378 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
PTPN9P43378 RARA-203ENST00000394086 2008 ntTSL 2 BASIC23.6■■□□□ 1.37
PTPN9P43378 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
PTPN9P43378 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
PTPN9P43378 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC23.6■■□□□ 1.37
PTPN9P43378 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC23.6■■□□□ 1.37
PTPN9P43378 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
PTPN9P43378 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
PTPN9P43378 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
PTPN9P43378 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
PTPN9P43378 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
PTPN9P43378 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC23.59■■□□□ 1.37
PTPN9P43378 MIR6724-1-201ENST00000616420 92 ntBASIC23.59■■□□□ 1.37
PTPN9P43378 MIR6724-2-201ENST00000616483 92 ntBASIC23.59■■□□□ 1.37
PTPN9P43378 MIR6724-4-201ENST00000617390 92 ntBASIC23.59■■□□□ 1.37
PTPN9P43378 MIR6724-3-201ENST00000622482 92 ntBASIC23.59■■□□□ 1.37
PTPN9P43378 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC23.59■■□□□ 1.37
PTPN9P43378 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
PTPN9P43378 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
PTPN9P43378 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
PTPN9P43378 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC23.59■■□□□ 1.37
PTPN9P43378 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
PTPN9P43378 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
PTPN9P43378 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
PTPN9P43378 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
PTPN9P43378 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC23.58■■□□□ 1.37
PTPN9P43378 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
PTPN9P43378 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.37
PTPN9P43378 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
PTPN9P43378 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC23.58■■□□□ 1.37
PTPN9P43378 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC23.58■■□□□ 1.37
PTPN9P43378 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
PTPN9P43378 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
PTPN9P43378 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
PTPN9P43378 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
PTPN9P43378 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
PTPN9P43378 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC23.58■■□□□ 1.36
PTPN9P43378 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
PTPN9P43378 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC23.57■■□□□ 1.36
PTPN9P43378 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms