Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
MSX2P35548 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
MSX2P35548 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
MSX2P35548 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.62■■□□□ 1.05
MSX2P35548 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSX2P35548 AC127496.7-201ENST00000625110 1798 ntBASIC21.62■■□□□ 1.05
MSX2P35548 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSX2P35548 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
MSX2P35548 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSX2P35548 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
MSX2P35548 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.62■■□□□ 1.05
MSX2P35548 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSX2P35548 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSX2P35548 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.62■■□□□ 1.05
MSX2P35548 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSX2P35548 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
MSX2P35548 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSX2P35548 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSX2P35548 REST-210ENST00000638187 1334 ntTSL 5 BASIC21.61■■□□□ 1.05
MSX2P35548 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSX2P35548 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.61■■□□□ 1.05
MSX2P35548 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.61■■□□□ 1.05
MSX2P35548 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSX2P35548 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
MSX2P35548 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
MSX2P35548 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSX2P35548 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.6■■□□□ 1.05
MSX2P35548 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
MSX2P35548 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
MSX2P35548 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC21.6■■□□□ 1.05
MSX2P35548 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC21.6■■□□□ 1.05
MSX2P35548 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
MSX2P35548 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
MSX2P35548 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
MSX2P35548 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSX2P35548 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSX2P35548 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSX2P35548 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.6■■□□□ 1.05
MSX2P35548 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSX2P35548 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC21.59■■□□□ 1.05
MSX2P35548 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
MSX2P35548 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.59■■□□□ 1.05
MSX2P35548 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSX2P35548 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
MSX2P35548 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSX2P35548 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSX2P35548 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSX2P35548 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
MSX2P35548 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.59■■□□□ 1.05
MSX2P35548 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
MSX2P35548 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
MSX2P35548 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.58■■□□□ 1.05
MSX2P35548 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.58■■□□□ 1.05
MSX2P35548 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
MSX2P35548 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSX2P35548 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.58■■□□□ 1.05
MSX2P35548 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
MSX2P35548 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
MSX2P35548 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
MSX2P35548 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC21.57■■□□□ 1.04
MSX2P35548 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
MSX2P35548 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.57■■□□□ 1.04
MSX2P35548 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSX2P35548 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC21.57■■□□□ 1.04
MSX2P35548 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC21.57■■□□□ 1.04
MSX2P35548 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSX2P35548 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSX2P35548 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
MSX2P35548 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.57■■□□□ 1.04
MSX2P35548 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSX2P35548 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.56■■□□□ 1.04
MSX2P35548 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSX2P35548 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.56■■□□□ 1.04
MSX2P35548 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSX2P35548 ECEL1P2-201ENST00000461596 1295 ntBASIC21.56■■□□□ 1.04
MSX2P35548 MACF1-219ENST00000484793 834 ntTSL 2 BASIC21.56■■□□□ 1.04
MSX2P35548 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSX2P35548 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
MSX2P35548 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.56■■□□□ 1.04
MSX2P35548 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.56■■□□□ 1.04
MSX2P35548 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.55■■□□□ 1.04
MSX2P35548 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
MSX2P35548 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
MSX2P35548 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MSX2P35548 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.55■■□□□ 1.04
MSX2P35548 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.55■■□□□ 1.04
MSX2P35548 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.55■■□□□ 1.04
MSX2P35548 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
MSX2P35548 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
MSX2P35548 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
MSX2P35548 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.54■■□□□ 1.04
MSX2P35548 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
MSX2P35548 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSX2P35548 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSX2P35548 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
MSX2P35548 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.54■■□□□ 1.04
MSX2P35548 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC21.54■■□□□ 1.04
MSX2P35548 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
MSX2P35548 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC21.54■■□□□ 1.04
MSX2P35548 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms