Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
MSX1P28360 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
MSX1P28360 AC110285.6-201ENST00000617652 491 ntBASIC20.77■□□□□ 0.92
MSX1P28360 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.77■□□□□ 0.92
MSX1P28360 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
MSX1P28360 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
MSX1P28360 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSX1P28360 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.76■□□□□ 0.91
MSX1P28360 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.76■□□□□ 0.91
MSX1P28360 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.76■□□□□ 0.91
MSX1P28360 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.76■□□□□ 0.91
MSX1P28360 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.76■□□□□ 0.91
MSX1P28360 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.76■□□□□ 0.91
MSX1P28360 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
MSX1P28360 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSX1P28360 AC093323.1-202ENST00000635031 2045 ntBASIC20.76■□□□□ 0.91
MSX1P28360 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
MSX1P28360 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSX1P28360 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
MSX1P28360 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MSX1P28360 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.75■□□□□ 0.91
MSX1P28360 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
MSX1P28360 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.75■□□□□ 0.91
MSX1P28360 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.75■□□□□ 0.91
MSX1P28360 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.75■□□□□ 0.91
MSX1P28360 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MSX1P28360 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
MSX1P28360 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSX1P28360 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSX1P28360 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
MSX1P28360 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSX1P28360 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSX1P28360 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
MSX1P28360 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC20.74■□□□□ 0.91
MSX1P28360 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSX1P28360 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
MSX1P28360 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
MSX1P28360 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.74■□□□□ 0.91
MSX1P28360 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC20.73■□□□□ 0.91
MSX1P28360 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSX1P28360 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
MSX1P28360 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSX1P28360 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.73■□□□□ 0.91
MSX1P28360 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSX1P28360 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.73■□□□□ 0.91
MSX1P28360 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.73■□□□□ 0.91
MSX1P28360 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSX1P28360 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSX1P28360 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSX1P28360 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
MSX1P28360 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSX1P28360 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
MSX1P28360 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MSX1P28360 AC096631.2-201ENST00000436136 790 ntBASIC20.72■□□□□ 0.91
MSX1P28360 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.72■□□□□ 0.91
MSX1P28360 MIR4466-201ENST00000606121 54 ntBASIC20.72■□□□□ 0.91
MSX1P28360 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MSX1P28360 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.72■□□□□ 0.91
MSX1P28360 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
MSX1P28360 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSX1P28360 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
MSX1P28360 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.71■□□□□ 0.91
MSX1P28360 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.71■□□□□ 0.91
MSX1P28360 AC005837.3-201ENST00000612163 286 ntBASIC20.71■□□□□ 0.91
MSX1P28360 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.71■□□□□ 0.91
MSX1P28360 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
MSX1P28360 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
MSX1P28360 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.7■□□□□ 0.9
MSX1P28360 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
MSX1P28360 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
MSX1P28360 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
MSX1P28360 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSX1P28360 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSX1P28360 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
MSX1P28360 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
MSX1P28360 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
MSX1P28360 AC133561.4-201ENST00000566112 224 ntBASIC20.69■□□□□ 0.9
MSX1P28360 AL512631.2-201ENST00000604634 923 ntBASIC20.69■□□□□ 0.9
MSX1P28360 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSX1P28360 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSX1P28360 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
MSX1P28360 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.69■□□□□ 0.9
MSX1P28360 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
MSX1P28360 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
MSX1P28360 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSX1P28360 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSX1P28360 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSX1P28360 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.68■□□□□ 0.9
MSX1P28360 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.68■□□□□ 0.9
MSX1P28360 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSX1P28360 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSX1P28360 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSX1P28360 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSX1P28360 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.67■□□□□ 0.9
MSX1P28360 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSX1P28360 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
MSX1P28360 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
MSX1P28360 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.67■□□□□ 0.9
MSX1P28360 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.67■□□□□ 0.9
MSX1P28360 ABCB10P4-201ENST00000566803 2184 ntBASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms