Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
CPSF4O95639 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
CPSF4O95639 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
CPSF4O95639 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
CPSF4O95639 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CPSF4O95639 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.52■■□□□ 1.04
CPSF4O95639 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CPSF4O95639 ATP5G2P3-201ENST00000429083 425 ntBASIC21.52■■□□□ 1.04
CPSF4O95639 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC21.52■■□□□ 1.04
CPSF4O95639 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC21.52■■□□□ 1.04
CPSF4O95639 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.52■■□□□ 1.04
CPSF4O95639 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CPSF4O95639 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CPSF4O95639 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CPSF4O95639 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CPSF4O95639 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
CPSF4O95639 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
CPSF4O95639 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CPSF4O95639 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
CPSF4O95639 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.51■■□□□ 1.03
CPSF4O95639 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CPSF4O95639 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.51■■□□□ 1.03
CPSF4O95639 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CPSF4O95639 AC120024.1-201ENST00000562672 995 ntBASIC21.51■■□□□ 1.03
CPSF4O95639 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CPSF4O95639 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CPSF4O95639 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.51■■□□□ 1.03
CPSF4O95639 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.51■■□□□ 1.03
CPSF4O95639 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
CPSF4O95639 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CPSF4O95639 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
CPSF4O95639 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CPSF4O95639 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
CPSF4O95639 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CPSF4O95639 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CPSF4O95639 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
CPSF4O95639 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CPSF4O95639 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CPSF4O95639 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.5■■□□□ 1.03
CPSF4O95639 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CPSF4O95639 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.5■■□□□ 1.03
CPSF4O95639 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CPSF4O95639 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CPSF4O95639 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.5■■□□□ 1.03
CPSF4O95639 ALDH1A3-203ENST00000557963 1670 ntBASIC21.5■■□□□ 1.03
CPSF4O95639 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CPSF4O95639 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.49■■□□□ 1.03
CPSF4O95639 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CPSF4O95639 IDNK-201ENST00000376417 511 ntTSL 5 BASIC21.49■■□□□ 1.03
CPSF4O95639 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CPSF4O95639 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC21.49■■□□□ 1.03
CPSF4O95639 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
CPSF4O95639 PVT1_1.1-201ENST00000615125 194 ntBASIC21.49■■□□□ 1.03
CPSF4O95639 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CPSF4O95639 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
CPSF4O95639 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
CPSF4O95639 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
CPSF4O95639 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
CPSF4O95639 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.49■■□□□ 1.03
CPSF4O95639 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
CPSF4O95639 AC092068.2-201ENST00000590491 1708 ntBASIC21.49■■□□□ 1.03
CPSF4O95639 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CPSF4O95639 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC21.48■■□□□ 1.03
CPSF4O95639 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CPSF4O95639 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CPSF4O95639 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CPSF4O95639 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC21.48■■□□□ 1.03
CPSF4O95639 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.48■■□□□ 1.03
CPSF4O95639 AC010980.1-201ENST00000587192 1142 ntBASIC21.48■■□□□ 1.03
CPSF4O95639 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CPSF4O95639 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CPSF4O95639 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CPSF4O95639 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CPSF4O95639 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CPSF4O95639 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.47■■□□□ 1.03
CPSF4O95639 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.47■■□□□ 1.03
CPSF4O95639 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CPSF4O95639 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CPSF4O95639 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.47■■□□□ 1.03
CPSF4O95639 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
CPSF4O95639 AC074183.2-201ENST00000623112 922 ntBASIC21.46■■□□□ 1.03
CPSF4O95639 DUSP8P3-201ENST00000399571 1760 ntBASIC21.46■■□□□ 1.03
CPSF4O95639 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CPSF4O95639 BEX3-202ENST00000372634 753 ntTSL 2 BASIC21.45■■□□□ 1.02
CPSF4O95639 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
CPSF4O95639 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.45■■□□□ 1.02
CPSF4O95639 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
CPSF4O95639 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CPSF4O95639 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.02
CPSF4O95639 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CPSF4O95639 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CPSF4O95639 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.45■■□□□ 1.02
CPSF4O95639 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CPSF4O95639 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CPSF4O95639 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
CPSF4O95639 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CPSF4O95639 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CPSF4O95639 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CPSF4O95639 TSPY13P-201ENST00000338964 914 ntBASIC21.44■■□□□ 1.02
CPSF4O95639 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms