Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC28.93■■■□□ 2.22
CACNA1FO60840 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC28.92■■■□□ 2.22
CACNA1FO60840 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC28.92■■■□□ 2.22
CACNA1FO60840 ABCB10P4-201ENST00000566803 2184 ntBASIC28.92■■■□□ 2.22
CACNA1FO60840 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
CACNA1FO60840 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
CACNA1FO60840 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC28.91■■■□□ 2.22
CACNA1FO60840 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC28.91■■■□□ 2.22
CACNA1FO60840 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
CACNA1FO60840 GATM-206ENST00000558336 1522 ntTSL 2 BASIC28.9■■■□□ 2.22
CACNA1FO60840 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC28.9■■■□□ 2.22
CACNA1FO60840 AC008406.3-201ENST00000620001 1374 ntBASIC28.9■■■□□ 2.22
CACNA1FO60840 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
CACNA1FO60840 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC28.9■■■□□ 2.22
CACNA1FO60840 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
CACNA1FO60840 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC28.9■■■□□ 2.22
CACNA1FO60840 AC009102.2-201ENST00000606772 1639 ntBASIC28.89■■■□□ 2.22
CACNA1FO60840 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC28.89■■■□□ 2.22
CACNA1FO60840 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
CACNA1FO60840 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
CACNA1FO60840 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC28.89■■■□□ 2.22
CACNA1FO60840 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.21
CACNA1FO60840 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC28.88■■■□□ 2.21
CACNA1FO60840 AC110285.6-201ENST00000617652 491 ntBASIC28.88■■■□□ 2.21
CACNA1FO60840 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC28.88■■■□□ 2.21
CACNA1FO60840 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC28.87■■■□□ 2.21
CACNA1FO60840 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC28.87■■■□□ 2.21
CACNA1FO60840 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC28.87■■■□□ 2.21
CACNA1FO60840 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC28.86■■■□□ 2.21
CACNA1FO60840 PTMA-205ENST00000410064 814 ntTSL 2 BASIC28.86■■■□□ 2.21
CACNA1FO60840 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC28.86■■■□□ 2.21
CACNA1FO60840 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
CACNA1FO60840 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
CACNA1FO60840 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC28.86■■■□□ 2.21
CACNA1FO60840 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
CACNA1FO60840 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC28.85■■■□□ 2.21
CACNA1FO60840 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
CACNA1FO60840 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC28.85■■■□□ 2.21
CACNA1FO60840 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC28.85■■■□□ 2.21
CACNA1FO60840 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC28.84■■■□□ 2.21
CACNA1FO60840 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC28.84■■■□□ 2.21
CACNA1FO60840 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
CACNA1FO60840 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
CACNA1FO60840 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC28.84■■■□□ 2.21
CACNA1FO60840 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC28.83■■■□□ 2.21
CACNA1FO60840 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC28.83■■■□□ 2.21
CACNA1FO60840 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC28.83■■■□□ 2.21
CACNA1FO60840 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC28.83■■■□□ 2.21
CACNA1FO60840 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC28.83■■■□□ 2.21
CACNA1FO60840 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC28.83■■■□□ 2.21
CACNA1FO60840 AC079630.1-202ENST00000618127 1840 ntBASIC28.82■■■□□ 2.2
CACNA1FO60840 AC093323.1-202ENST00000635031 2045 ntBASIC28.82■■■□□ 2.2
CACNA1FO60840 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC28.82■■■□□ 2.2
CACNA1FO60840 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
CACNA1FO60840 PTCHD3P2-201ENST00000424937 1205 ntBASIC28.82■■■□□ 2.2
CACNA1FO60840 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
CACNA1FO60840 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
CACNA1FO60840 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC28.82■■■□□ 2.2
CACNA1FO60840 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
CACNA1FO60840 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC28.81■■■□□ 2.2
CACNA1FO60840 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC28.81■■■□□ 2.2
CACNA1FO60840 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC28.81■■■□□ 2.2
CACNA1FO60840 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC28.81■■■□□ 2.2
CACNA1FO60840 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC28.81■■■□□ 2.2
CACNA1FO60840 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
CACNA1FO60840 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
CACNA1FO60840 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
CACNA1FO60840 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
CACNA1FO60840 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
CACNA1FO60840 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
CACNA1FO60840 DUX4L19-201ENST00000557448 1267 ntBASIC28.79■■■□□ 2.2
CACNA1FO60840 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC28.79■■■□□ 2.2
CACNA1FO60840 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC28.79■■■□□ 2.2
CACNA1FO60840 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
CACNA1FO60840 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
CACNA1FO60840 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
CACNA1FO60840 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC28.79■■■□□ 2.2
CACNA1FO60840 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC28.78■■■□□ 2.2
CACNA1FO60840 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
CACNA1FO60840 PEMT-206ENST00000435340 960 ntTSL 5 BASIC28.78■■■□□ 2.2
CACNA1FO60840 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC28.78■■■□□ 2.2
CACNA1FO60840 AC241377.3-202ENST00000626088 1088 ntBASIC28.78■■■□□ 2.2
CACNA1FO60840 AC241585.3-202ENST00000628937 1088 ntBASIC28.78■■■□□ 2.2
CACNA1FO60840 AC245100.8-202ENST00000629247 1058 ntBASIC28.78■■■□□ 2.2
CACNA1FO60840 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC28.78■■■□□ 2.2
CACNA1FO60840 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC28.78■■■□□ 2.2
CACNA1FO60840 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
CACNA1FO60840 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
CACNA1FO60840 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC28.77■■■□□ 2.2
CACNA1FO60840 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC28.77■■■□□ 2.2
CACNA1FO60840 SUDS3P1-201ENST00000505831 966 ntBASIC28.77■■■□□ 2.2
CACNA1FO60840 ASB1-202ENST00000409297 878 ntTSL 5 BASIC28.77■■■□□ 2.2
CACNA1FO60840 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC28.76■■■□□ 2.19
CACNA1FO60840 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC28.76■■■□□ 2.19
CACNA1FO60840 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC28.76■■■□□ 2.19
CACNA1FO60840 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC28.76■■■□□ 2.19
CACNA1FO60840 AC144652.1-201ENST00000609974 1624 ntBASIC28.76■■■□□ 2.19
CACNA1FO60840 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC28.75■■■□□ 2.19
CACNA1FO60840 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC28.75■■■□□ 2.19
CACNA1FO60840 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC28.75■■■□□ 2.19
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms