Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
XRCC3O43542 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.43■□□□□ 0.7
XRCC3O43542 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
XRCC3O43542 ESRRAP2-201ENST00000418437 1549 ntBASIC19.43■□□□□ 0.7
XRCC3O43542 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
XRCC3O43542 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
XRCC3O43542 AC090877.2-201ENST00000558441 1738 ntBASIC19.42■□□□□ 0.7
XRCC3O43542 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
XRCC3O43542 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
XRCC3O43542 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
XRCC3O43542 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
XRCC3O43542 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
XRCC3O43542 AC007375.3-201ENST00000600936 2314 ntBASIC19.42■□□□□ 0.7
XRCC3O43542 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
XRCC3O43542 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
XRCC3O43542 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC19.42■□□□□ 0.7
XRCC3O43542 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
XRCC3O43542 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
XRCC3O43542 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
XRCC3O43542 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC19.41■□□□□ 0.7
XRCC3O43542 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC19.41■□□□□ 0.7
XRCC3O43542 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
XRCC3O43542 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.41■□□□□ 0.7
XRCC3O43542 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
XRCC3O43542 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.41■□□□□ 0.7
XRCC3O43542 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
XRCC3O43542 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
XRCC3O43542 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
XRCC3O43542 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
XRCC3O43542 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
XRCC3O43542 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
XRCC3O43542 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
XRCC3O43542 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
XRCC3O43542 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC19.4■□□□□ 0.7
XRCC3O43542 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
XRCC3O43542 COMT-203ENST00000403184 2217 ntTSL 2 BASIC19.4■□□□□ 0.7
XRCC3O43542 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.4■□□□□ 0.7
XRCC3O43542 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
XRCC3O43542 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
XRCC3O43542 RAP2CP1-202ENST00000605179 643 ntBASIC19.4■□□□□ 0.7
XRCC3O43542 AC016575.1-201ENST00000607026 382 ntBASIC19.4■□□□□ 0.7
XRCC3O43542 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
XRCC3O43542 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.4■□□□□ 0.7
XRCC3O43542 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC19.4■□□□□ 0.7
XRCC3O43542 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
XRCC3O43542 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC19.4■□□□□ 0.7
XRCC3O43542 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC19.4■□□□□ 0.7
XRCC3O43542 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
XRCC3O43542 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
XRCC3O43542 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
XRCC3O43542 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
XRCC3O43542 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
XRCC3O43542 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC19.39■□□□□ 0.7
XRCC3O43542 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
XRCC3O43542 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
XRCC3O43542 GFER-205ENST00000569451 517 ntTSL 5 BASIC19.39■□□□□ 0.69
XRCC3O43542 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC19.39■□□□□ 0.69
XRCC3O43542 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
XRCC3O43542 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
XRCC3O43542 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC19.39■□□□□ 0.69
XRCC3O43542 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
XRCC3O43542 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
XRCC3O43542 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
XRCC3O43542 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
XRCC3O43542 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
XRCC3O43542 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.38■□□□□ 0.69
XRCC3O43542 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
XRCC3O43542 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
XRCC3O43542 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
XRCC3O43542 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
XRCC3O43542 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
XRCC3O43542 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
XRCC3O43542 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC19.38■□□□□ 0.69
XRCC3O43542 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC19.38■□□□□ 0.69
XRCC3O43542 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.37■□□□□ 0.69
XRCC3O43542 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
XRCC3O43542 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC19.37■□□□□ 0.69
XRCC3O43542 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
XRCC3O43542 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
XRCC3O43542 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
XRCC3O43542 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
XRCC3O43542 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
XRCC3O43542 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
XRCC3O43542 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
XRCC3O43542 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
XRCC3O43542 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
XRCC3O43542 AC026202.3-201ENST00000600805 1127 ntBASIC19.37■□□□□ 0.69
XRCC3O43542 AC007029.1-201ENST00000604183 313 ntBASIC19.37■□□□□ 0.69
XRCC3O43542 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
XRCC3O43542 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
XRCC3O43542 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
XRCC3O43542 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
XRCC3O43542 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
XRCC3O43542 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
XRCC3O43542 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
XRCC3O43542 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
XRCC3O43542 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
XRCC3O43542 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
XRCC3O43542 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
XRCC3O43542 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 908.8 ms