Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC39.95■■■■□ 3.99
CCDC88BA6NC98 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC39.95■■■■□ 3.99
CCDC88BA6NC98 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC39.95■■■■□ 3.99
CCDC88BA6NC98 ASB1-202ENST00000409297 878 ntTSL 5 BASIC39.94■■■■□ 3.98
CCDC88BA6NC98 AC034268.1-201ENST00000441047 882 ntBASIC39.94■■■■□ 3.98
CCDC88BA6NC98 YBX1P1-201ENST00000445822 960 ntBASIC39.94■■■■□ 3.98
CCDC88BA6NC98 DUX4L2-201ENST00000561772 1275 ntBASIC39.94■■■■□ 3.98
CCDC88BA6NC98 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC39.94■■■■□ 3.98
CCDC88BA6NC98 DUX4L6-201ENST00000626483 1275 ntBASIC39.94■■■■□ 3.98
CCDC88BA6NC98 DUX4L1-201ENST00000627662 1275 ntBASIC39.94■■■■□ 3.98
CCDC88BA6NC98 DUX4L8-201ENST00000629013 1275 ntBASIC39.94■■■■□ 3.98
CCDC88BA6NC98 DUX4L3-201ENST00000630187 1275 ntBASIC39.94■■■■□ 3.98
CCDC88BA6NC98 DUX4L7-201ENST00000630678 1275 ntBASIC39.94■■■■□ 3.98
CCDC88BA6NC98 DUX4L5-201ENST00000630834 1275 ntBASIC39.94■■■■□ 3.98
CCDC88BA6NC98 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC39.94■■■■□ 3.98
CCDC88BA6NC98 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC39.94■■■■□ 3.98
CCDC88BA6NC98 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC39.94■■■■□ 3.98
CCDC88BA6NC98 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC39.94■■■■□ 3.98
CCDC88BA6NC98 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC39.94■■■■□ 3.98
CCDC88BA6NC98 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC39.94■■■■□ 3.98
CCDC88BA6NC98 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC39.93■■■■□ 3.98
CCDC88BA6NC98 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC39.93■■■■□ 3.98
CCDC88BA6NC98 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC39.93■■■■□ 3.98
CCDC88BA6NC98 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC39.93■■■■□ 3.98
CCDC88BA6NC98 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC39.93■■■■□ 3.98
CCDC88BA6NC98 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC39.93■■■■□ 3.98
CCDC88BA6NC98 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC39.93■■■■□ 3.98
CCDC88BA6NC98 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC39.92■■■■□ 3.98
CCDC88BA6NC98 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC39.92■■■■□ 3.98
CCDC88BA6NC98 pRNA.6-201ENST00000610482 90 ntBASIC39.92■■■■□ 3.98
CCDC88BA6NC98 pRNA.5-201ENST00000612139 90 ntBASIC39.92■■■■□ 3.98
CCDC88BA6NC98 pRNA.11-201ENST00000618423 90 ntBASIC39.92■■■■□ 3.98
CCDC88BA6NC98 pRNA.13-201ENST00000619112 90 ntBASIC39.92■■■■□ 3.98
CCDC88BA6NC98 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC39.91■■■■□ 3.98
CCDC88BA6NC98 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC39.91■■■■□ 3.98
CCDC88BA6NC98 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC39.91■■■■□ 3.98
CCDC88BA6NC98 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC39.91■■■■□ 3.98
CCDC88BA6NC98 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC39.91■■■■□ 3.98
CCDC88BA6NC98 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC39.9■■■■□ 3.98
CCDC88BA6NC98 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC39.9■■■■□ 3.98
CCDC88BA6NC98 AC090192.1-201ENST00000517740 490 ntBASIC39.9■■■■□ 3.98
CCDC88BA6NC98 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC39.9■■■■□ 3.98
CCDC88BA6NC98 RARRES2P11-201ENST00000635158 484 ntBASIC39.9■■■■□ 3.98
CCDC88BA6NC98 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC39.9■■■■□ 3.98
CCDC88BA6NC98 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC39.9■■■■□ 3.98
CCDC88BA6NC98 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC39.9■■■■□ 3.98
CCDC88BA6NC98 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC39.89■■■■□ 3.98
CCDC88BA6NC98 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC39.89■■■■□ 3.98
CCDC88BA6NC98 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC39.89■■■■□ 3.98
CCDC88BA6NC98 AL161729.1-201ENST00000604104 1402 ntBASIC39.89■■■■□ 3.98
CCDC88BA6NC98 AC027612.3-201ENST00000413684 1047 ntBASIC39.89■■■■□ 3.98
CCDC88BA6NC98 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC39.89■■■■□ 3.98
CCDC88BA6NC98 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC39.89■■■■□ 3.98
CCDC88BA6NC98 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC39.89■■■■□ 3.98
CCDC88BA6NC98 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC39.89■■■■□ 3.98
CCDC88BA6NC98 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC39.88■■■■□ 3.97
CCDC88BA6NC98 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC39.88■■■■□ 3.97
CCDC88BA6NC98 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC39.88■■■■□ 3.97
CCDC88BA6NC98 TSPY26P-201ENST00000476365 1326 ntBASIC39.88■■■■□ 3.97
CCDC88BA6NC98 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC39.88■■■■□ 3.97
CCDC88BA6NC98 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC39.88■■■■□ 3.97
CCDC88BA6NC98 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC39.88■■■■□ 3.97
CCDC88BA6NC98 HLA-L-211ENST00000482052 1765 ntBASIC39.88■■■■□ 3.97
CCDC88BA6NC98 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC39.87■■■■□ 3.97
CCDC88BA6NC98 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC39.87■■■■□ 3.97
CCDC88BA6NC98 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC39.87■■■■□ 3.97
CCDC88BA6NC98 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC39.87■■■■□ 3.97
CCDC88BA6NC98 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC39.87■■■■□ 3.97
CCDC88BA6NC98 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC39.87■■■■□ 3.97
CCDC88BA6NC98 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC39.86■■■■□ 3.97
CCDC88BA6NC98 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC39.86■■■■□ 3.97
CCDC88BA6NC98 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC39.86■■■■□ 3.97
CCDC88BA6NC98 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC39.86■■■■□ 3.97
CCDC88BA6NC98 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC39.86■■■■□ 3.97
CCDC88BA6NC98 AC022517.1-201ENST00000592429 346 ntBASIC39.86■■■■□ 3.97
CCDC88BA6NC98 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC39.86■■■■□ 3.97
CCDC88BA6NC98 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC39.86■■■■□ 3.97
CCDC88BA6NC98 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC39.85■■■■□ 3.97
CCDC88BA6NC98 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC39.85■■■■□ 3.97
CCDC88BA6NC98 AC091060.1-201ENST00000623524 1766 ntBASIC39.85■■■■□ 3.97
CCDC88BA6NC98 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC39.85■■■■□ 3.97
CCDC88BA6NC98 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC39.85■■■■□ 3.97
CCDC88BA6NC98 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC39.84■■■■□ 3.97
CCDC88BA6NC98 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC39.84■■■■□ 3.97
CCDC88BA6NC98 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC39.84■■■■□ 3.97
CCDC88BA6NC98 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC39.84■■■■□ 3.97
CCDC88BA6NC98 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC39.84■■■■□ 3.97
CCDC88BA6NC98 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC39.84■■■■□ 3.97
CCDC88BA6NC98 RAB43-208ENST00000615093 783 ntTSL 5 BASIC39.84■■■■□ 3.97
CCDC88BA6NC98 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC39.83■■■■□ 3.97
CCDC88BA6NC98 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC39.83■■■■□ 3.97
CCDC88BA6NC98 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC39.82■■■■□ 3.97
CCDC88BA6NC98 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC39.82■■■■□ 3.97
CCDC88BA6NC98 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC39.82■■■■□ 3.97
CCDC88BA6NC98 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC39.82■■■■□ 3.96
CCDC88BA6NC98 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC39.82■■■■□ 3.96
CCDC88BA6NC98 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC39.81■■■■□ 3.96
CCDC88BA6NC98 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC39.81■■■■□ 3.96
CCDC88BA6NC98 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC39.81■■■■□ 3.96
CCDC88BA6NC98 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC39.81■■■■□ 3.96
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms