Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SHANK3Q9BYB0 CDK4P1-201ENST00000454213 828 ntBASIC18.07■□□□□ 0.48
SHANK3Q9BYB0 SRPK2P-201ENST00000523408 1100 ntBASIC18.07■□□□□ 0.48
SHANK3Q9BYB0 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SHANK3Q9BYB0 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SHANK3Q9BYB0 FMO6P-201ENST00000236166 1620 ntBASIC18.07■□□□□ 0.48
SHANK3Q9BYB0 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHANK3Q9BYB0 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHANK3Q9BYB0 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SHANK3Q9BYB0 CICP24-201ENST00000605464 2705 ntBASIC18.07■□□□□ 0.48
SHANK3Q9BYB0 AC113367.3-201ENST00000508316 1912 ntBASIC18.07■□□□□ 0.48
SHANK3Q9BYB0 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
SHANK3Q9BYB0 SELENBP1-208ENST00000447402 1530 ntTSL 2 BASIC18.07■□□□□ 0.48
SHANK3Q9BYB0 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SHANK3Q9BYB0 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
SHANK3Q9BYB0 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC18.07■□□□□ 0.48
SHANK3Q9BYB0 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
SHANK3Q9BYB0 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 HNRNPA1P10-201ENST00000444945 962 ntBASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 AC108724.1-201ENST00000481669 352 ntBASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 AC092756.1-201ENST00000560248 448 ntTSL 3 BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 MED11-202ENST00000573708 802 ntTSL 2 BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 LINC00969-253ENST00000625338 804 ntTSL 5 BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 USP39-207ENST00000450066 2086 ntTSL 2 BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 RNU1-80P-201ENST00000459500 161 ntBASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 AC022274.1-201ENST00000467082 490 ntTSL 5 BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 RPL29P2-202ENST00000498671 657 ntBASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 AC020910.6-201ENST00000623084 1459 ntBASIC18.06■□□□□ 0.48
SHANK3Q9BYB0 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 TUBB4AP1-201ENST00000450755 1325 ntBASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 BX322557.2-201ENST00000445242 379 ntTSL 3 BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 CTB-178M22.2-201ENST00000519795 503 ntTSL 4 BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 WNT5B-206ENST00000542408 508 ntTSL 3 BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 MYMX-201ENST00000573382 817 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 SUCLA2-205ENST00000470760 1445 ntTSL 2 BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 NRADDP-202ENST00000641269 1585 ntBASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SHANK3Q9BYB0 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHANK3Q9BYB0 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC18.04■□□□□ 0.48
SHANK3Q9BYB0 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SHANK3Q9BYB0 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHANK3Q9BYB0 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHANK3Q9BYB0 RCC2P1-201ENST00000452257 1476 ntBASIC18.04■□□□□ 0.48
SHANK3Q9BYB0 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SHANK3Q9BYB0 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SHANK3Q9BYB0 ACY3-202ENST00000529256 933 ntTSL 3 BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms