Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 DEFT1P-201ENST00000453425 496 ntBASIC13.23□□□□□ -0.29
USB1Q9BQ65 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC13.23□□□□□ -0.29
USB1Q9BQ65 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC13.23□□□□□ -0.29
USB1Q9BQ65 MESTP3-201ENST00000503460 968 ntBASIC13.23□□□□□ -0.29
USB1Q9BQ65 CSNK1A1-207ENST00000515768 1098 ntAPPRIS P4 TSL 5 BASIC13.23□□□□□ -0.29
USB1Q9BQ65 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC13.23□□□□□ -0.29
USB1Q9BQ65 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC13.23□□□□□ -0.29
USB1Q9BQ65 EEF1DP1-201ENST00000585891 896 ntBASIC13.23□□□□□ -0.29
USB1Q9BQ65 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC13.23□□□□□ -0.29
USB1Q9BQ65 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC13.23□□□□□ -0.29
USB1Q9BQ65 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
USB1Q9BQ65 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
USB1Q9BQ65 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
USB1Q9BQ65 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
USB1Q9BQ65 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC13.23□□□□□ -0.29
USB1Q9BQ65 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
USB1Q9BQ65 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
USB1Q9BQ65 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
USB1Q9BQ65 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
USB1Q9BQ65 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
USB1Q9BQ65 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC13.23□□□□□ -0.29
USB1Q9BQ65 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC13.23□□□□□ -0.29
USB1Q9BQ65 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
USB1Q9BQ65 AC126365.1-201ENST00000578585 1514 ntBASIC13.23□□□□□ -0.29
USB1Q9BQ65 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
USB1Q9BQ65 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
USB1Q9BQ65 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
USB1Q9BQ65 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC13.23□□□□□ -0.29
USB1Q9BQ65 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
USB1Q9BQ65 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
USB1Q9BQ65 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 AC126335.2-201ENST00000623362 4637 ntBASIC13.22□□□□□ -0.29
USB1Q9BQ65 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
USB1Q9BQ65 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
USB1Q9BQ65 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
USB1Q9BQ65 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
USB1Q9BQ65 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
USB1Q9BQ65 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
USB1Q9BQ65 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
USB1Q9BQ65 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
USB1Q9BQ65 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
USB1Q9BQ65 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
USB1Q9BQ65 NDUFAB1P1-201ENST00000404262 460 ntBASIC13.22□□□□□ -0.29
USB1Q9BQ65 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 BTBD6P1-201ENST00000412176 1267 ntBASIC13.22□□□□□ -0.29
USB1Q9BQ65 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 POM121L8P-201ENST00000417732 1281 ntBASIC13.22□□□□□ -0.29
USB1Q9BQ65 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 RPS3AP29-201ENST00000437728 769 ntBASIC13.22□□□□□ -0.29
USB1Q9BQ65 POM121L9P-203ENST00000441984 1285 ntBASIC13.22□□□□□ -0.29
USB1Q9BQ65 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 CDC23-208ENST00000505120 455 ntTSL 3 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
USB1Q9BQ65 LYRM2-204ENST00000520441 791 ntTSL 3 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 AC040934.1-201ENST00000523101 513 ntTSL 2 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 AC009268.1-201ENST00000561352 1203 ntBASIC13.22□□□□□ -0.29
USB1Q9BQ65 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 AC105430.1-202ENST00000567477 483 ntTSL 3 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 AC016180.1-201ENST00000567945 403 ntBASIC13.22□□□□□ -0.29
USB1Q9BQ65 AC139099.1-201ENST00000573737 976 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
USB1Q9BQ65 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 BNIP3P39-201ENST00000601077 554 ntBASIC13.22□□□□□ -0.29
USB1Q9BQ65 AC244157.2-201ENST00000616239 1006 ntBASIC13.22□□□□□ -0.29
USB1Q9BQ65 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 AL732372.1-203ENST00000635159 994 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
USB1Q9BQ65 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
USB1Q9BQ65 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
USB1Q9BQ65 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
USB1Q9BQ65 TNN-203ENST00000622870 3719 ntTSL 5 BASIC13.22□□□□□ -0.29
USB1Q9BQ65 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
USB1Q9BQ65 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
USB1Q9BQ65 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
USB1Q9BQ65 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
USB1Q9BQ65 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
USB1Q9BQ65 AC015818.8-201ENST00000587907 1519 ntBASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms