Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 OR5L1-201ENST00000625203 1110 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
IFT140Q96RY7 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC23.04■■□□□ 1.28
IFT140Q96RY7 MCOLN3-201ENST00000341115 1762 ntTSL 2 BASIC23.04■■□□□ 1.28
IFT140Q96RY7 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
IFT140Q96RY7 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
IFT140Q96RY7 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
IFT140Q96RY7 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC23.04■■□□□ 1.28
IFT140Q96RY7 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
IFT140Q96RY7 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
IFT140Q96RY7 MBIP-211ENST00000621657 1809 ntTSL 5 BASIC23.03■■□□□ 1.28
IFT140Q96RY7 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
IFT140Q96RY7 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC23.03■■□□□ 1.28
IFT140Q96RY7 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
IFT140Q96RY7 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
IFT140Q96RY7 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC23.03■■□□□ 1.28
IFT140Q96RY7 GAST-201ENST00000329402 470 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
IFT140Q96RY7 ARAF-202ENST00000377039 1271 ntTSL 2 BASIC23.03■■□□□ 1.28
IFT140Q96RY7 Metazoa_SRP.8-201ENST00000398067 251 ntBASIC23.03■■□□□ 1.28
IFT140Q96RY7 RBMX2P5-201ENST00000424312 969 ntBASIC23.03■■□□□ 1.28
IFT140Q96RY7 AC008021.1-201ENST00000474180 414 ntBASIC23.03■■□□□ 1.28
IFT140Q96RY7 AL358215.1-201ENST00000481350 482 ntTSL 5 BASIC23.03■■□□□ 1.28
IFT140Q96RY7 KIAA1191-210ENST00000510164 1243 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
IFT140Q96RY7 AC099343.1-201ENST00000513481 609 ntBASIC23.03■■□□□ 1.28
IFT140Q96RY7 AC133555.4-201ENST00000569081 152 ntBASIC23.03■■□□□ 1.28
IFT140Q96RY7 AC005332.2-201ENST00000590010 930 ntBASIC23.03■■□□□ 1.28
IFT140Q96RY7 AC137723.2-201ENST00000623540 398 ntBASIC23.03■■□□□ 1.28
IFT140Q96RY7 AC012594.1-273ENST00000626618 816 ntTSL 5 BASIC23.03■■□□□ 1.28
IFT140Q96RY7 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
IFT140Q96RY7 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
IFT140Q96RY7 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
IFT140Q96RY7 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
IFT140Q96RY7 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
IFT140Q96RY7 LINC00675-202ENST00000581851 1530 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
IFT140Q96RY7 AL162727.3-201ENST00000635661 2787 ntBASIC23.02■■□□□ 1.28
IFT140Q96RY7 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
IFT140Q96RY7 DLX4-206ENST00000611342 1662 ntBASIC23.02■■□□□ 1.28
IFT140Q96RY7 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC23.02■■□□□ 1.28
IFT140Q96RY7 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC23.02■■□□□ 1.28
IFT140Q96RY7 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
IFT140Q96RY7 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC23.02■■□□□ 1.28
IFT140Q96RY7 CFAP20-201ENST00000262498 1354 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
IFT140Q96RY7 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
IFT140Q96RY7 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
IFT140Q96RY7 ACTG1P23-201ENST00000437653 1074 ntBASIC23.02■■□□□ 1.28
IFT140Q96RY7 Z69733.1-201ENST00000445990 632 ntTSL 3 BASIC23.02■■□□□ 1.28
IFT140Q96RY7 RPL29P2-202ENST00000498671 657 ntBASIC23.02■■□□□ 1.28
IFT140Q96RY7 TMEM154-202ENST00000504064 878 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
IFT140Q96RY7 UBE2D3-221ENST00000507845 577 ntTSL 4 BASIC23.02■■□□□ 1.28
IFT140Q96RY7 CHIC2-204ENST00000512964 711 ntTSL 5 BASIC23.02■■□□□ 1.28
IFT140Q96RY7 AC104117.4-201ENST00000521486 847 ntBASIC23.02■■□□□ 1.28
IFT140Q96RY7 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
IFT140Q96RY7 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
IFT140Q96RY7 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC23.02■■□□□ 1.28
IFT140Q96RY7 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
IFT140Q96RY7 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
IFT140Q96RY7 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.28
IFT140Q96RY7 LPGAT1-201ENST00000366996 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
IFT140Q96RY7 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC23.02■■□□□ 1.28
IFT140Q96RY7 CPA1-207ENST00000484324 1303 ntTSL 5 BASIC23.02■■□□□ 1.27
IFT140Q96RY7 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.27
IFT140Q96RY7 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC23.02■■□□□ 1.27
IFT140Q96RY7 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC23.02■■□□□ 1.27
IFT140Q96RY7 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC23.01■■□□□ 1.27
IFT140Q96RY7 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
IFT140Q96RY7 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
IFT140Q96RY7 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC23.01■■□□□ 1.27
IFT140Q96RY7 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
IFT140Q96RY7 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
IFT140Q96RY7 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
IFT140Q96RY7 MIR181D-201ENST00000384853 137 ntBASIC23.01■■□□□ 1.27
IFT140Q96RY7 CD3G-202ENST00000392883 1179 ntTSL 5 BASIC23.01■■□□□ 1.27
IFT140Q96RY7 AL590399.1-204ENST00000430302 781 ntTSL 5 BASIC23.01■■□□□ 1.27
IFT140Q96RY7 RNF7-205ENST00000480908 782 ntTSL 4 BASIC23.01■■□□□ 1.27
IFT140Q96RY7 THEG-204ENST00000530711 1162 ntAPPRIS ALT2 TSL 3 BASIC23.01■■□□□ 1.27
IFT140Q96RY7 AL139099.3-201ENST00000556657 401 ntTSL 3 BASIC23.01■■□□□ 1.27
IFT140Q96RY7 MIR5193-201ENST00000584510 109 ntBASIC23.01■■□□□ 1.27
IFT140Q96RY7 PLA2G4C-AS1-203ENST00000601950 454 ntTSL 3 BASIC23.01■■□□□ 1.27
IFT140Q96RY7 AC008993.3-201ENST00000633603 631 ntTSL 5 BASIC23.01■■□□□ 1.27
IFT140Q96RY7 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
IFT140Q96RY7 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
IFT140Q96RY7 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
IFT140Q96RY7 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
IFT140Q96RY7 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC23.01■■□□□ 1.27
IFT140Q96RY7 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC23.01■■□□□ 1.27
IFT140Q96RY7 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC23.01■■□□□ 1.27
IFT140Q96RY7 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
IFT140Q96RY7 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC23.01■■□□□ 1.27
IFT140Q96RY7 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
IFT140Q96RY7 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
IFT140Q96RY7 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC23■■□□□ 1.27
IFT140Q96RY7 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
IFT140Q96RY7 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
IFT140Q96RY7 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
IFT140Q96RY7 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC23■■□□□ 1.27
IFT140Q96RY7 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
IFT140Q96RY7 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
IFT140Q96RY7 LXN-201ENST00000264265 1116 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
IFT140Q96RY7 MRPL55-209ENST00000366735 1212 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
IFT140Q96RY7 FAM157A-201ENST00000437428 1141 ntTSL 3 BASIC23■■□□□ 1.27
IFT140Q96RY7 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC23■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms