Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 GSN-215ENST00000545652 2428 ntTSL 2 BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
VPS13AQ96RL7 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 AC002350.2-201ENST00000623894 1828 ntBASIC13.9□□□□□ -0.18
VPS13AQ96RL7 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 GSN-203ENST00000373808 2664 ntTSL 2 BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 NR1I3-201ENST00000367979 1074 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 NR1I3-207ENST00000367985 1074 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 LCK-206ENST00000373564 2137 ntTSL 5 BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 AC147651.3-201ENST00000429872 731 ntTSL 2 BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 AC005722.1-201ENST00000431878 964 ntBASIC13.9□□□□□ -0.18
VPS13AQ96RL7 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 NR1I3-225ENST00000508387 634 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 CYB5D2-202ENST00000573984 495 ntTSL 4 BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 AL133467.4-201ENST00000602953 725 ntBASIC13.9□□□□□ -0.18
VPS13AQ96RL7 AL080250.1-203ENST00000607799 747 ntTSL 2 BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 AGPAT1-203ENST00000375107 2234 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 XRN1-203ENST00000463916 2075 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 AL121753.2-201ENST00000624581 1461 ntBASIC13.9□□□□□ -0.18
VPS13AQ96RL7 PSME2P2-201ENST00000453033 700 ntBASIC13.9□□□□□ -0.18
VPS13AQ96RL7 AC092903.1-201ENST00000466506 262 ntBASIC13.9□□□□□ -0.18
VPS13AQ96RL7 C11orf58-207ENST00000525684 575 ntTSL 2 BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 AC008750.2-201ENST00000526996 627 ntTSL 3 BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 C11orf58-209ENST00000528634 776 ntTSL 5 BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 AC010183.1-201ENST00000552413 559 ntTSL 4 BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 AC140658.4-201ENST00000561990 352 ntBASIC13.9□□□□□ -0.18
VPS13AQ96RL7 MIR4265-201ENST00000582152 99 ntBASIC13.9□□□□□ -0.18
VPS13AQ96RL7 AC092327.2-201ENST00000595705 901 ntTSL 3 BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 KCNQ1OT1_1.1-201ENST00000622358 464 ntBASIC13.9□□□□□ -0.18
VPS13AQ96RL7 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 DAP3-201ENST00000343043 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 AC144831.1-201ENST00000573312 2656 ntBASIC13.9□□□□□ -0.18
VPS13AQ96RL7 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 BPIFB6-201ENST00000349552 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VPS13AQ96RL7 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
VPS13AQ96RL7 CICP6-201ENST00000457191 2729 ntBASIC13.89□□□□□ -0.19
VPS13AQ96RL7 CUTA-204ENST00000440279 822 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 RNF7-205ENST00000480908 782 ntTSL 4 BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 NAT9-204ENST00000578822 839 ntTSL 3 BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 AC073869.4-201ENST00000620841 800 ntBASIC13.89□□□□□ -0.19
VPS13AQ96RL7 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 RIBC1-202ENST00000375327 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 AC015909.5-201ENST00000624336 2266 ntBASIC13.89□□□□□ -0.19
VPS13AQ96RL7 IFITM1-202ENST00000408968 855 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 AP001615.1-201ENST00000423276 461 ntTSL 3 BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 CYP4F29P-202ENST00000428301 1279 ntTSL 2 BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 EEF1DP2-201ENST00000433698 843 ntBASIC13.89□□□□□ -0.19
VPS13AQ96RL7 UGT1A12P-201ENST00000447084 853 ntBASIC13.89□□□□□ -0.19
VPS13AQ96RL7 ALDOAP1-201ENST00000491506 1078 ntBASIC13.89□□□□□ -0.19
VPS13AQ96RL7 AC079779.4-201ENST00000619113 548 ntTSL 5 BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 SULT1A1-203ENST00000395607 1386 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 RBP4-203ENST00000371469 814 ntTSL 5 BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 ABCD1P4-201ENST00000399687 604 ntBASIC13.89□□□□□ -0.19
VPS13AQ96RL7 APOBEC3B-204ENST00000407298 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
VPS13AQ96RL7 DNM1P46-202ENST00000415963 882 ntBASIC13.89□□□□□ -0.19
VPS13AQ96RL7 RPSAP6-201ENST00000417882 882 ntBASIC13.89□□□□□ -0.19
VPS13AQ96RL7 TONSL-AS1-201ENST00000442850 428 ntTSL 5 BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms