Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 NME6-203ENST00000415644 849 ntTSL 2 BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 BCYRN1-201ENST00000418539 200 ntBASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 NKAIN1P1-201ENST00000435754 582 ntBASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 NAT9-222ENST00000583476 583 ntTSL 3 BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 SNX12-206ENST00000622259 661 ntTSL 5 BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 AGER-203ENST00000375065 665 ntTSL 2 BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 AL136309.1-201ENST00000403917 691 ntBASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 CDC23-208ENST00000505120 455 ntTSL 3 BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 NCK2-206ENST00000522586 490 ntTSL 5 BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CHMP4CQ96CF2 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 TCAM1P-207ENST00000485295 1537 ntBASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CHMP4CQ96CF2 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms