Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC14.77□□□□□ -0.05
HLA-CQ95604 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HLA-CQ95604 SNRPCP15-201ENST00000424055 192 ntBASIC14.77□□□□□ -0.05
HLA-CQ95604 NALT1-202ENST00000450304 437 ntTSL 3 BASIC14.77□□□□□ -0.05
HLA-CQ95604 CDK4P1-201ENST00000454213 828 ntBASIC14.77□□□□□ -0.05
HLA-CQ95604 AL162377.1-202ENST00000456688 1181 ntTSL 2 BASIC14.77□□□□□ -0.05
HLA-CQ95604 AC008494.1-201ENST00000497612 796 ntBASIC14.77□□□□□ -0.05
HLA-CQ95604 MT3-202ENST00000561640 514 ntTSL 3 BASIC14.77□□□□□ -0.05
HLA-CQ95604 AC132812.1-201ENST00000583145 892 ntBASIC14.77□□□□□ -0.05
HLA-CQ95604 ACTBP9-201ENST00000587663 1099 ntBASIC14.77□□□□□ -0.05
HLA-CQ95604 AC008750.5-201ENST00000595500 473 ntTSL 2 BASIC14.77□□□□□ -0.05
HLA-CQ95604 AC010503.4-201ENST00000615487 688 ntBASIC14.77□□□□□ -0.05
HLA-CQ95604 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC14.77□□□□□ -0.05
HLA-CQ95604 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HLA-CQ95604 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.77□□□□□ -0.05
HLA-CQ95604 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.77□□□□□ -0.05
HLA-CQ95604 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HLA-CQ95604 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HLA-CQ95604 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC14.77□□□□□ -0.05
HLA-CQ95604 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.77□□□□□ -0.05
HLA-CQ95604 PCDHA14-201ENST00000506751 2298 ntBASIC14.77□□□□□ -0.05
HLA-CQ95604 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HLA-CQ95604 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HLA-CQ95604 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HLA-CQ95604 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HLA-CQ95604 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HLA-CQ95604 AC015688.4-201ENST00000580780 1647 ntBASIC14.77□□□□□ -0.05
HLA-CQ95604 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HLA-CQ95604 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HLA-CQ95604 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-CQ95604 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-CQ95604 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-CQ95604 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC14.76□□□□□ -0.05
HLA-CQ95604 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-CQ95604 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.76□□□□□ -0.05
HLA-CQ95604 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-CQ95604 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
HLA-CQ95604 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-CQ95604 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC14.76□□□□□ -0.05
HLA-CQ95604 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC14.76□□□□□ -0.05
HLA-CQ95604 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-CQ95604 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-CQ95604 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-CQ95604 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-CQ95604 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC14.76□□□□□ -0.05
HLA-CQ95604 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-CQ95604 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-CQ95604 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
HLA-CQ95604 GH1-203ENST00000351388 685 ntTSL 2 BASIC14.76□□□□□ -0.05
HLA-CQ95604 AIG1-203ENST00000367596 559 ntTSL 2 BASIC14.76□□□□□ -0.05
HLA-CQ95604 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC14.76□□□□□ -0.05
HLA-CQ95604 LINP1-201ENST00000417112 917 ntTSL 2 BASIC14.76□□□□□ -0.05
HLA-CQ95604 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC14.76□□□□□ -0.05
HLA-CQ95604 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-CQ95604 PLA2G15-203ENST00000444212 943 ntTSL 2 BASIC14.76□□□□□ -0.05
HLA-CQ95604 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC14.76□□□□□ -0.05
HLA-CQ95604 TREX1-203ENST00000456089 629 ntTSL 3 BASIC14.76□□□□□ -0.05
HLA-CQ95604 RN7SL173P-201ENST00000461853 292 ntBASIC14.76□□□□□ -0.05
HLA-CQ95604 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC14.76□□□□□ -0.05
HLA-CQ95604 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC14.76□□□□□ -0.05
HLA-CQ95604 AC092910.2-201ENST00000491262 348 ntBASIC14.76□□□□□ -0.05
HLA-CQ95604 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC14.76□□□□□ -0.05
HLA-CQ95604 RN7SL480P-201ENST00000581481 294 ntBASIC14.76□□□□□ -0.05
HLA-CQ95604 SRD5A3-AS1-203ENST00000591915 709 ntTSL 5 BASIC14.76□□□□□ -0.05
HLA-CQ95604 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC14.76□□□□□ -0.05
HLA-CQ95604 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC14.76□□□□□ -0.05
HLA-CQ95604 AL391262.2-201ENST00000622466 494 ntBASIC14.76□□□□□ -0.05
HLA-CQ95604 AL353658.2-201ENST00000629794 519 ntTSL 5 BASIC14.76□□□□□ -0.05
HLA-CQ95604 FCGR3A-208ENST00000638849 873 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-CQ95604 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-CQ95604 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-CQ95604 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC14.76□□□□□ -0.05
HLA-CQ95604 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-CQ95604 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-CQ95604 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC14.76□□□□□ -0.05
HLA-CQ95604 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-CQ95604 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-CQ95604 RTN1-203ENST00000395090 1609 ntTSL 2 BASIC14.76□□□□□ -0.05
HLA-CQ95604 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC14.76□□□□□ -0.05
HLA-CQ95604 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-CQ95604 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-CQ95604 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-CQ95604 DKFZP434H168-201ENST00000567381 1905 ntBASIC14.76□□□□□ -0.05
HLA-CQ95604 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC14.76□□□□□ -0.05
HLA-CQ95604 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-CQ95604 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
HLA-CQ95604 AC087481.3-201ENST00000602886 1894 ntBASIC14.76□□□□□ -0.05
HLA-CQ95604 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-CQ95604 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HLA-CQ95604 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC14.75□□□□□ -0.05
HLA-CQ95604 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HLA-CQ95604 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC14.75□□□□□ -0.05
HLA-CQ95604 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
HLA-CQ95604 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
HLA-CQ95604 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
HLA-CQ95604 LILRP2-202ENST00000413572 1383 ntBASIC14.75□□□□□ -0.05
HLA-CQ95604 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC14.75□□□□□ -0.05
HLA-CQ95604 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HLA-CQ95604 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HLA-CQ95604 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms