Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 SLC6A6P1-201ENST00000413933 1850 ntBASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 AL591122.2-201ENST00000624125 1853 ntBASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 MDM1-203ENST00000393543 2718 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 GSAP-205ENST00000430584 600 ntTSL 5 BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 AL049829.2-201ENST00000554010 285 ntTSL 3 BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 ARL16-202ENST00000570561 768 ntTSL 2 BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 PASK-204ENST00000405260 4942 ntAPPRIS P3 TSL 5 BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 RERG-209ENST00000546331 1383 ntTSL 2 BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
DEPDC4Q8N2C3 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 AL137783.1-201ENST00000623494 1896 ntBASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 TRPM4-201ENST00000252826 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 AC023794.5-201ENST00000564380 2157 ntBASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 OR5D16-201ENST00000378396 987 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 DGCR5-201ENST00000399539 862 ntBASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 RHOA-206ENST00000454011 889 ntTSL 2 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 RPL13AP25-201ENST00000484130 612 ntBASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 CHCHD2P3-201ENST00000603038 451 ntBASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 AC000095.1-201ENST00000603208 874 ntBASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 AC011840.2-201ENST00000563063 1520 ntBASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 DNAJC24-202ENST00000465995 2004 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 WARS-203ENST00000358655 2466 ntTSL 2 BASIC13.67□□□□□ -0.22
DEPDC4Q8N2C3 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms