Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 NAGK-204ENST00000443872 878 ntTSL 3 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 AP000358.1-201ENST00000456260 156 ntBASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 COG4-212ENST00000564653 590 ntTSL 5 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 AC232323.1-201ENST00000540724 2099 ntBASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC60Q8IWA6 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 OR8T1P-201ENST00000421347 918 ntBASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 FGFR3P1-201ENST00000449999 601 ntBASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 DUTP3-201ENST00000450025 415 ntBASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 NDUFS6P1-201ENST00000485187 316 ntBASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 NEU3-205ENST00000531619 582 ntTSL 5 BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 KRT8P1-201ENST00000557533 1207 ntBASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 HPD-204ENST00000543163 1709 ntTSL 5 BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 AL136379.1-201ENST00000623471 2642 ntBASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CCDC60Q8IWA6 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
CCDC60Q8IWA6 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms