Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 ANKRD19P-201ENST00000338192 862 ntBASIC17.37■□□□□ 0.37
RNF20Q5VTR2 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 FAM58BP-201ENST00000439056 645 ntBASIC17.37■□□□□ 0.37
RNF20Q5VTR2 YBX1P6-201ENST00000442962 1002 ntBASIC17.37■□□□□ 0.37
RNF20Q5VTR2 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 ACA64.2-201ENST00000459014 129 ntBASIC17.37■□□□□ 0.37
RNF20Q5VTR2 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 AC009955.4-201ENST00000597192 544 ntBASIC17.37■□□□□ 0.37
RNF20Q5VTR2 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
RNF20Q5VTR2 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 AL157407.1-201ENST00000435784 904 ntBASIC17.36■□□□□ 0.37
RNF20Q5VTR2 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 AP005482.1-201ENST00000563722 1273 ntBASIC17.36■□□□□ 0.37
RNF20Q5VTR2 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 MIR6775-201ENST00000617557 69 ntBASIC17.36■□□□□ 0.37
RNF20Q5VTR2 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 TMBIM7P-202ENST00000641474 1516 ntBASIC17.36■□□□□ 0.37
RNF20Q5VTR2 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF20Q5VTR2 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
RNF20Q5VTR2 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RNF20Q5VTR2 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC17.35■□□□□ 0.37
RNF20Q5VTR2 AC090643.2-201ENST00000623442 2029 ntBASIC17.35■□□□□ 0.37
RNF20Q5VTR2 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC17.35■□□□□ 0.37
RNF20Q5VTR2 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
RNF20Q5VTR2 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC17.35■□□□□ 0.37
RNF20Q5VTR2 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
RNF20Q5VTR2 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF20Q5VTR2 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC17.35■□□□□ 0.37
RNF20Q5VTR2 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RNF20Q5VTR2 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF20Q5VTR2 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RNF20Q5VTR2 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RNF20Q5VTR2 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
RNF20Q5VTR2 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC17.35■□□□□ 0.37
RNF20Q5VTR2 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
RNF20Q5VTR2 STX1A-203ENST00000395155 783 ntTSL 2 BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms