Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC14.8□□□□□ -0.04
USP39Q53GS9 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC14.8□□□□□ -0.04
USP39Q53GS9 AL109837.1-201ENST00000603272 613 ntBASIC14.8□□□□□ -0.04
USP39Q53GS9 AC007718.1-201ENST00000621078 280 ntBASIC14.8□□□□□ -0.04
USP39Q53GS9 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC14.8□□□□□ -0.04
USP39Q53GS9 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
USP39Q53GS9 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
USP39Q53GS9 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
USP39Q53GS9 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC14.8□□□□□ -0.04
USP39Q53GS9 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC14.8□□□□□ -0.04
USP39Q53GS9 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
USP39Q53GS9 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
USP39Q53GS9 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC14.8□□□□□ -0.04
USP39Q53GS9 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
USP39Q53GS9 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
USP39Q53GS9 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.8□□□□□ -0.04
USP39Q53GS9 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
USP39Q53GS9 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.8□□□□□ -0.04
USP39Q53GS9 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
USP39Q53GS9 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
USP39Q53GS9 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC14.79□□□□□ -0.04
USP39Q53GS9 AC026748.1-201ENST00000624349 3251 ntBASIC14.79□□□□□ -0.04
USP39Q53GS9 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
USP39Q53GS9 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
USP39Q53GS9 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
USP39Q53GS9 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
USP39Q53GS9 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
USP39Q53GS9 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
USP39Q53GS9 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
USP39Q53GS9 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
USP39Q53GS9 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
USP39Q53GS9 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
USP39Q53GS9 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
USP39Q53GS9 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
USP39Q53GS9 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC14.79□□□□□ -0.04
USP39Q53GS9 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
USP39Q53GS9 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC14.79□□□□□ -0.04
USP39Q53GS9 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
USP39Q53GS9 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
USP39Q53GS9 CICP12-201ENST00000455801 843 ntBASIC14.79□□□□□ -0.04
USP39Q53GS9 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC14.79□□□□□ -0.04
USP39Q53GS9 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
USP39Q53GS9 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC14.79□□□□□ -0.04
USP39Q53GS9 CAP2P1-201ENST00000557743 1390 ntBASIC14.79□□□□□ -0.04
USP39Q53GS9 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
USP39Q53GS9 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
USP39Q53GS9 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC14.79□□□□□ -0.04
USP39Q53GS9 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC14.79□□□□□ -0.04
USP39Q53GS9 AL157813.1-201ENST00000612996 587 ntBASIC14.79□□□□□ -0.04
USP39Q53GS9 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC14.79□□□□□ -0.04
USP39Q53GS9 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
USP39Q53GS9 AC007686.3-201ENST00000619017 3487 ntBASIC14.79□□□□□ -0.04
USP39Q53GS9 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
USP39Q53GS9 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
USP39Q53GS9 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
USP39Q53GS9 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC14.79□□□□□ -0.04
USP39Q53GS9 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC14.79□□□□□ -0.04
USP39Q53GS9 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.78□□□□□ -0.04
USP39Q53GS9 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.78□□□□□ -0.04
USP39Q53GS9 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
USP39Q53GS9 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.78□□□□□ -0.04
USP39Q53GS9 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
USP39Q53GS9 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC14.78□□□□□ -0.04
USP39Q53GS9 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
USP39Q53GS9 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC14.78□□□□□ -0.04
USP39Q53GS9 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC14.78□□□□□ -0.04
USP39Q53GS9 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
USP39Q53GS9 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
USP39Q53GS9 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
USP39Q53GS9 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
USP39Q53GS9 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
USP39Q53GS9 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
USP39Q53GS9 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
USP39Q53GS9 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
USP39Q53GS9 RAN-210ENST00000541630 1475 ntTSL 2 BASIC14.78□□□□□ -0.04
USP39Q53GS9 AC003102.2-201ENST00000589195 1469 ntBASIC14.78□□□□□ -0.04
USP39Q53GS9 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC14.78□□□□□ -0.04
USP39Q53GS9 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
USP39Q53GS9 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
USP39Q53GS9 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
USP39Q53GS9 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
USP39Q53GS9 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
USP39Q53GS9 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC14.78□□□□□ -0.04
USP39Q53GS9 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
USP39Q53GS9 AL157407.1-201ENST00000435784 904 ntBASIC14.78□□□□□ -0.04
USP39Q53GS9 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC14.78□□□□□ -0.04
USP39Q53GS9 DNM1P30-201ENST00000563586 452 ntBASIC14.78□□□□□ -0.04
USP39Q53GS9 BX088702.1-201ENST00000610784 235 ntBASIC14.78□□□□□ -0.04
USP39Q53GS9 WT1-AS_6.1-201ENST00000614919 121 ntBASIC14.78□□□□□ -0.04
USP39Q53GS9 AC242376.2-201ENST00000619355 883 ntBASIC14.78□□□□□ -0.04
USP39Q53GS9 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
USP39Q53GS9 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.78□□□□□ -0.04
USP39Q53GS9 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
USP39Q53GS9 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
USP39Q53GS9 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
USP39Q53GS9 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
USP39Q53GS9 AC005089.1-201ENST00000619486 2241 ntBASIC14.78□□□□□ -0.04
USP39Q53GS9 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
USP39Q53GS9 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
USP39Q53GS9 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms