Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 BRCA1-225ENST00000586385 781 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
PRKDCP78527 AC245884.8-201ENST00000599382 880 ntBASIC10.01□□□□□ -0.81
PRKDCP78527 uc_338.24-201ENST00000617802 182 ntBASIC10.01□□□□□ -0.81
PRKDCP78527 Metazoa_SRP.153-201ENST00000620153 341 ntBASIC10.01□□□□□ -0.81
PRKDCP78527 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC10.01□□□□□ -0.81
PRKDCP78527 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC10□□□□□ -0.81
PRKDCP78527 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC10□□□□□ -0.81
PRKDCP78527 ENTPD3-204ENST00000456402 1749 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
PRKDCP78527 AL031056.1-202ENST00000635954 2193 ntTSL 5 BASIC10□□□□□ -0.81
PRKDCP78527 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC10□□□□□ -0.81
PRKDCP78527 ANP32B-201ENST00000339399 1463 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
PRKDCP78527 GMPR2-205ENST00000456667 1484 ntTSL 1 (best) BASIC10□□□□□ -0.81
PRKDCP78527 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC10□□□□□ -0.81
PRKDCP78527 CST2-201ENST00000304725 748 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
PRKDCP78527 SH3BGR-202ENST00000380631 780 ntTSL 5 BASIC10□□□□□ -0.81
PRKDCP78527 MRPL45P2-201ENST00000425159 927 ntTSL 1 (best) BASIC10□□□□□ -0.81
PRKDCP78527 GABARAPL2-203ENST00000565057 571 ntTSL 2 BASIC10□□□□□ -0.81
PRKDCP78527 SKINT1L-204ENST00000604015 540 ntTSL 4 BASIC10□□□□□ -0.81
PRKDCP78527 AC008622.3-201ENST00000621170 600 ntBASIC10□□□□□ -0.81
PRKDCP78527 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC10□□□□□ -0.81
PRKDCP78527 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
PRKDCP78527 HIST2H2BE-201ENST00000369155 2194 ntAPPRIS P1 BASIC10□□□□□ -0.81
PRKDCP78527 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
PRKDCP78527 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC10□□□□□ -0.81
PRKDCP78527 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC10□□□□□ -0.81
PRKDCP78527 PNLIPRP2-201ENST00000579578 1482 ntAPPRIS P5 TSL 2 BASIC10□□□□□ -0.81
PRKDCP78527 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC10□□□□□ -0.81
PRKDCP78527 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
PRKDCP78527 STK25-235ENST00000543554 2556 ntTSL 2 BASIC10□□□□□ -0.81
PRKDCP78527 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC10□□□□□ -0.81
PRKDCP78527 AC106872.9-201ENST00000512437 1393 ntBASIC10□□□□□ -0.81
PRKDCP78527 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC10□□□□□ -0.81
PRKDCP78527 RPSAP61-201ENST00000412542 878 ntBASIC10□□□□□ -0.81
PRKDCP78527 HAX1-211ENST00000532105 771 ntTSL 3 BASIC10□□□□□ -0.81
PRKDCP78527 AC108002.3-201ENST00000612629 503 ntTSL 2 BASIC10□□□□□ -0.81
PRKDCP78527 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
PRKDCP78527 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC10□□□□□ -0.81
PRKDCP78527 AC099398.1-201ENST00000567919 2776 ntBASIC10□□□□□ -0.81
PRKDCP78527 HBD-202ENST00000380299 785 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
PRKDCP78527 HLA-W-207ENST00000439514 771 ntBASIC10□□□□□ -0.81
PRKDCP78527 PRRX2-AS1-201ENST00000440413 429 ntTSL 2 BASIC10□□□□□ -0.81
PRKDCP78527 SVILP1-203ENST00000450581 486 ntTSL 3 BASIC10□□□□□ -0.81
PRKDCP78527 RPL29P2-202ENST00000498671 657 ntBASIC10□□□□□ -0.81
PRKDCP78527 snoZ6.3-201ENST00000583496 76 ntBASIC10□□□□□ -0.81
PRKDCP78527 NSRP1-213ENST00000584423 482 ntTSL 2 BASIC10□□□□□ -0.81
PRKDCP78527 PTMAP5-202ENST00000607242 1162 ntBASIC10□□□□□ -0.81
PRKDCP78527 AC091905.3-201ENST00000624959 234 ntBASIC10□□□□□ -0.81
PRKDCP78527 PIGA-209ENST00000634582 965 ntTSL 2 BASIC10□□□□□ -0.81
PRKDCP78527 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
PRKDCP78527 RUSC1-AS1-202ENST00000446880 1836 ntTSL 2 BASIC10□□□□□ -0.81
PRKDCP78527 ENO3-201ENST00000323997 1521 ntAPPRIS P1 TSL 5 BASIC10□□□□□ -0.81
PRKDCP78527 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
PRKDCP78527 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC10□□□□□ -0.81
PRKDCP78527 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC10□□□□□ -0.81
PRKDCP78527 TMEM74B-201ENST00000381894 1730 ntAPPRIS P2 TSL 1 (best) BASIC10□□□□□ -0.81
PRKDCP78527 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
PRKDCP78527 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
PRKDCP78527 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
PRKDCP78527 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
PRKDCP78527 ZNF485-202ENST00000374435 2052 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
PRKDCP78527 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC9.99□□□□□ -0.81
PRKDCP78527 TPM3P7-201ENST00000338274 732 ntBASIC9.99□□□□□ -0.81
PRKDCP78527 INMT-202ENST00000409539 803 ntAPPRIS ALT1 TSL 1 (best) BASIC9.99□□□□□ -0.81
PRKDCP78527 MRPS16P3-201ENST00000415961 374 ntBASIC9.99□□□□□ -0.81
PRKDCP78527 SNAP25-AS1-202ENST00000426491 804 ntTSL 5 BASIC9.99□□□□□ -0.81
PRKDCP78527 AC012066.1-201ENST00000439252 694 ntBASIC9.99□□□□□ -0.81
PRKDCP78527 AC114812.4-201ENST00000506676 757 ntBASIC9.99□□□□□ -0.81
PRKDCP78527 AC006273.1-201ENST00000606966 861 ntBASIC9.99□□□□□ -0.81
PRKDCP78527 AC245369.8-201ENST00000636589 306 ntBASIC9.99□□□□□ -0.81
PRKDCP78527 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC9.99□□□□□ -0.81
PRKDCP78527 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC9.99□□□□□ -0.81
PRKDCP78527 SIGLEC17P-204ENST00000618545 1517 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
PRKDCP78527 SMUG1-220ENST00000513838 2119 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
PRKDCP78527 SULT1A3-201ENST00000338971 1097 ntAPPRIS P2 TSL 1 (best) BASIC9.99□□□□□ -0.81
PRKDCP78527 MRPL55-219ENST00000391867 685 ntAPPRIS P1 TSL 3 BASIC9.99□□□□□ -0.81
PRKDCP78527 TUBB8P9-201ENST00000422534 1276 ntBASIC9.99□□□□□ -0.81
PRKDCP78527 TUBB8P10-201ENST00000430210 1279 ntBASIC9.99□□□□□ -0.81
PRKDCP78527 ZNF677-207ENST00000598806 701 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
PRKDCP78527 LINC02427-202ENST00000605270 1059 ntTSL 2 BASIC9.99□□□□□ -0.81
PRKDCP78527 PSMG3-AS1-207ENST00000612019 586 ntTSL 4 BASIC9.99□□□□□ -0.81
PRKDCP78527 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
PRKDCP78527 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC9.99□□□□□ -0.81
PRKDCP78527 MCOLN3-201ENST00000341115 1762 ntTSL 2 BASIC9.99□□□□□ -0.81
PRKDCP78527 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
PRKDCP78527 RTP2-201ENST00000358241 1346 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
PRKDCP78527 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC9.99□□□□□ -0.81
PRKDCP78527 MAL-204ENST00000354078 831 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
PRKDCP78527 FANK1-203ENST00000368693 1294 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
PRKDCP78527 RPSAP16-201ENST00000447583 821 ntBASIC9.99□□□□□ -0.81
PRKDCP78527 HNRNPA1P9-201ENST00000450624 950 ntBASIC9.99□□□□□ -0.81
PRKDCP78527 RN7SL148P-201ENST00000467120 279 ntBASIC9.99□□□□□ -0.81
PRKDCP78527 SPATA24-204ENST00000507779 606 ntTSL 5 BASIC9.99□□□□□ -0.81
PRKDCP78527 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC9.99□□□□□ -0.81
PRKDCP78527 PEX11A-204ENST00000561224 529 ntTSL 4 BASIC9.99□□□□□ -0.81
PRKDCP78527 AC005920.4-201ENST00000573301 492 ntTSL 4 BASIC9.99□□□□□ -0.81
PRKDCP78527 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC9.99□□□□□ -0.81
PRKDCP78527 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
PRKDCP78527 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC9.99□□□□□ -0.81
PRKDCP78527 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
PRKDCP78527 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms