Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 SNX21-203ENST00000372541 771 ntTSL 2 BASIC11.79□□□□□ -0.52
CX3CL1P78423 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 RN7SKP175-201ENST00000408472 289 ntBASIC11.79□□□□□ -0.52
CX3CL1P78423 MIR1202-201ENST00000408529 83 ntBASIC11.79□□□□□ -0.52
CX3CL1P78423 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC11.79□□□□□ -0.52
CX3CL1P78423 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC11.79□□□□□ -0.52
CX3CL1P78423 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC11.79□□□□□ -0.52
CX3CL1P78423 CTBP2P5-201ENST00000454986 1264 ntBASIC11.79□□□□□ -0.52
CX3CL1P78423 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC11.79□□□□□ -0.52
CX3CL1P78423 COX5BP1-201ENST00000507622 393 ntBASIC11.79□□□□□ -0.52
CX3CL1P78423 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC11.79□□□□□ -0.52
CX3CL1P78423 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC11.79□□□□□ -0.52
CX3CL1P78423 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC11.79□□□□□ -0.52
CX3CL1P78423 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC11.79□□□□□ -0.52
CX3CL1P78423 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC11.79□□□□□ -0.52
CX3CL1P78423 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC11.79□□□□□ -0.52
CX3CL1P78423 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
CX3CL1P78423 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 PPT1-213ENST00000641319 2388 ntBASIC11.79□□□□□ -0.52
CX3CL1P78423 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
CX3CL1P78423 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
CX3CL1P78423 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
CX3CL1P78423 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
CX3CL1P78423 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
CX3CL1P78423 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
CX3CL1P78423 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
CX3CL1P78423 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
CX3CL1P78423 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
CX3CL1P78423 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC11.79□□□□□ -0.52
CX3CL1P78423 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC11.79□□□□□ -0.52
CX3CL1P78423 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC11.79□□□□□ -0.52
CX3CL1P78423 AGGF1P1-201ENST00000509500 2073 ntBASIC11.79□□□□□ -0.52
CX3CL1P78423 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
CX3CL1P78423 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
CX3CL1P78423 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
CX3CL1P78423 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
CX3CL1P78423 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC11.78□□□□□ -0.52
CX3CL1P78423 FES-203ENST00000394302 2133 ntTSL 5 BASIC11.78□□□□□ -0.52
CX3CL1P78423 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CX3CL1P78423 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CX3CL1P78423 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CX3CL1P78423 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC11.78□□□□□ -0.52
CX3CL1P78423 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
CX3CL1P78423 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CX3CL1P78423 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CX3CL1P78423 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CX3CL1P78423 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC11.78□□□□□ -0.52
CX3CL1P78423 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CX3CL1P78423 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC11.78□□□□□ -0.52
CX3CL1P78423 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC11.78□□□□□ -0.52
CX3CL1P78423 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CX3CL1P78423 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CX3CL1P78423 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CX3CL1P78423 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
CX3CL1P78423 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
CX3CL1P78423 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CX3CL1P78423 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC11.78□□□□□ -0.52
CX3CL1P78423 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
CX3CL1P78423 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CX3CL1P78423 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CX3CL1P78423 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC11.78□□□□□ -0.52
CX3CL1P78423 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CX3CL1P78423 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CX3CL1P78423 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CX3CL1P78423 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC11.78□□□□□ -0.52
CX3CL1P78423 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC11.78□□□□□ -0.52
CX3CL1P78423 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
CX3CL1P78423 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CX3CL1P78423 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC11.78□□□□□ -0.52
CX3CL1P78423 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC11.78□□□□□ -0.52
CX3CL1P78423 GPR53P-205ENST00000457298 1084 ntBASIC11.78□□□□□ -0.52
CX3CL1P78423 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CX3CL1P78423 CDC23-208ENST00000505120 455 ntTSL 3 BASIC11.78□□□□□ -0.52
CX3CL1P78423 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC11.78□□□□□ -0.52
CX3CL1P78423 AC079316.1-201ENST00000548397 411 ntBASIC11.78□□□□□ -0.52
CX3CL1P78423 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC11.78□□□□□ -0.52
CX3CL1P78423 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC11.78□□□□□ -0.52
CX3CL1P78423 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC11.78□□□□□ -0.52
CX3CL1P78423 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC11.78□□□□□ -0.52
CX3CL1P78423 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC11.78□□□□□ -0.52
CX3CL1P78423 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC11.78□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms