Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 CA10-202ENST00000442502 2935 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC10.31□□□□□ -0.76
CKS1BP61024 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC10.31□□□□□ -0.76
CKS1BP61024 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 SLC11A1-201ENST00000233202 3852 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 TRPM5-202ENST00000528453 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 SPICE1-201ENST00000295872 5417 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 BCL2L13-214ENST00000543133 4975 ntTSL 2 BASIC10.31□□□□□ -0.76
CKS1BP61024 BCL2L13-217ENST00000618481 4961 ntAPPRIS ALT2 TSL 5 BASIC10.31□□□□□ -0.76
CKS1BP61024 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC10.31□□□□□ -0.76
CKS1BP61024 CPT1A-205ENST00000539743 2382 ntAPPRIS P1 TSL 5 BASIC10.31□□□□□ -0.76
CKS1BP61024 LINC02015-202ENST00000436078 2957 ntTSL 2 BASIC10.31□□□□□ -0.76
CKS1BP61024 PLEKHA2-207ENST00000616834 3594 ntTSL 5 BASIC10.31□□□□□ -0.76
CKS1BP61024 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 MTMR2-201ENST00000346299 4681 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 MTMR2-203ENST00000393223 4681 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 ZNF398-201ENST00000426851 5268 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 GRIP2-206ENST00000637182 3727 ntAPPRIS ALT2 TSL 5 BASIC10.31□□□□□ -0.76
CKS1BP61024 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 IL9RP2-201ENST00000423948 1312 ntBASIC10.31□□□□□ -0.76
CKS1BP61024 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
CKS1BP61024 ZNF384-201ENST00000319770 3266 ntTSL 2 BASIC10.31□□□□□ -0.76
CKS1BP61024 DAB2IP-202ENST00000309989 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC10.3□□□□□ -0.76
CKS1BP61024 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 TP73-207ENST00000378290 1831 ntTSL 2 BASIC10.3□□□□□ -0.76
CKS1BP61024 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 GRIN1-205ENST00000371555 4003 ntTSL 5 BASIC10.3□□□□□ -0.76
CKS1BP61024 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 LMCD1-201ENST00000157600 8405 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC10.3□□□□□ -0.76
CKS1BP61024 SPART-203ENST00000451493 4944 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 AC092123.2-201ENST00000611189 5421 ntBASIC10.3□□□□□ -0.76
CKS1BP61024 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC10.3□□□□□ -0.76
CKS1BP61024 PPP2R1A-205ENST00000462990 2730 ntTSL 2 BASIC10.3□□□□□ -0.76
CKS1BP61024 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 BRD1-201ENST00000216267 4614 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC10.3□□□□□ -0.76
CKS1BP61024 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC10.3□□□□□ -0.76
CKS1BP61024 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 STK11IP-204ENST00000456909 3615 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC10.3□□□□□ -0.76
CKS1BP61024 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC10.3□□□□□ -0.76
CKS1BP61024 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC10.3□□□□□ -0.76
CKS1BP61024 SYK-203ENST00000375751 4936 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC10.3□□□□□ -0.76
CKS1BP61024 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC10.3□□□□□ -0.76
CKS1BP61024 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC10.3□□□□□ -0.76
CKS1BP61024 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC10.3□□□□□ -0.76
CKS1BP61024 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC10.3□□□□□ -0.76
CKS1BP61024 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC10.3□□□□□ -0.76
CKS1BP61024 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC10.3□□□□□ -0.76
CKS1BP61024 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC10.3□□□□□ -0.76
CKS1BP61024 AC005237.2-201ENST00000434368 219 ntBASIC10.3□□□□□ -0.76
CKS1BP61024 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC10.3□□□□□ -0.76
CKS1BP61024 NME4-207ENST00000450036 985 ntTSL 3 BASIC10.3□□□□□ -0.76
CKS1BP61024 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC10.3□□□□□ -0.76
CKS1BP61024 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC10.3□□□□□ -0.76
CKS1BP61024 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC10.3□□□□□ -0.76
CKS1BP61024 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC10.3□□□□□ -0.76
CKS1BP61024 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC10.3□□□□□ -0.76
CKS1BP61024 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC10.3□□□□□ -0.76
CKS1BP61024 AC140113.2-201ENST00000604370 208 ntBASIC10.3□□□□□ -0.76
CKS1BP61024 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC10.3□□□□□ -0.76
CKS1BP61024 AC003101.2-201ENST00000612557 442 ntBASIC10.3□□□□□ -0.76
CKS1BP61024 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 CITED2-204ENST00000618718 901 ntTSL 2 BASIC10.3□□□□□ -0.76
CKS1BP61024 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC10.3□□□□□ -0.76
CKS1BP61024 AC008806.1-201ENST00000624962 2443 ntBASIC10.3□□□□□ -0.76
CKS1BP61024 PTPRN2-203ENST00000389418 4706 ntAPPRIS P4 TSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC10.3□□□□□ -0.76
CKS1BP61024 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 RNF217-210ENST00000521654 11325 ntAPPRIS P2 TSL 2 BASIC10.3□□□□□ -0.76
CKS1BP61024 ZNF799-202ENST00000430385 2583 ntAPPRIS P1 TSL 2 BASIC10.3□□□□□ -0.76
CKS1BP61024 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC10.3□□□□□ -0.76
CKS1BP61024 CELF3-202ENST00000290585 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 PPP1R26P1-201ENST00000474415 3613 ntBASIC10.3□□□□□ -0.76
CKS1BP61024 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC10.3□□□□□ -0.76
CKS1BP61024 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 GADL1-201ENST00000282538 3759 ntAPPRIS P1 TSL 5 BASIC10.3□□□□□ -0.76
CKS1BP61024 POLE-201ENST00000320574 7840 ntAPPRIS P2 TSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 PUM2-203ENST00000361078 6251 ntTSL 2 BASIC10.3□□□□□ -0.76
CKS1BP61024 AL139011.2-201ENST00000556710 2635 ntAPPRIS P1 TSL 2 BASIC10.3□□□□□ -0.76
CKS1BP61024 FAM214B-208ENST00000605244 3016 ntAPPRIS P1 TSL 5 BASIC10.3□□□□□ -0.76
CKS1BP61024 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC10.3□□□□□ -0.76
CKS1BP61024 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC10.3□□□□□ -0.76
CKS1BP61024 SCARA5-202ENST00000380385 2934 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms