Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC16.93■□□□□ 0.3
BRCA1P38398 AC023051.2-201ENST00000541141 460 ntBASIC16.93■□□□□ 0.3
BRCA1P38398 SNRPF-205ENST00000553192 552 ntTSL 4 BASIC16.93■□□□□ 0.3
BRCA1P38398 AC099524.1-203ENST00000565272 756 ntTSL 5 BASIC16.93■□□□□ 0.3
BRCA1P38398 DERL2-206ENST00000572834 589 ntTSL 3 BASIC16.93■□□□□ 0.3
BRCA1P38398 CRABP2-204ENST00000621784 1033 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
BRCA1P38398 AC079331.1-201ENST00000623200 1200 ntBASIC16.93■□□□□ 0.3
BRCA1P38398 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
BRCA1P38398 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
BRCA1P38398 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
BRCA1P38398 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
BRCA1P38398 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
BRCA1P38398 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
BRCA1P38398 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
BRCA1P38398 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
BRCA1P38398 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.93■□□□□ 0.3
BRCA1P38398 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.93■□□□□ 0.3
BRCA1P38398 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
BRCA1P38398 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
BRCA1P38398 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
BRCA1P38398 MCRS1-203ENST00000546244 1686 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
BRCA1P38398 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
BRCA1P38398 OR51B5-201ENST00000300773 939 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
BRCA1P38398 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC16.93■□□□□ 0.3
BRCA1P38398 TAC4-203ENST00000352793 564 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
BRCA1P38398 MRPS12-202ENST00000402029 929 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
BRCA1P38398 AC007383.2-201ENST00000420509 752 ntTSL 2 BASIC16.93■□□□□ 0.3
BRCA1P38398 AC004910.1-201ENST00000433493 787 ntBASIC16.93■□□□□ 0.3
BRCA1P38398 RPL38-202ENST00000439590 431 ntAPPRIS P2 TSL 2 BASIC16.93■□□□□ 0.3
BRCA1P38398 NDUFB2P1-201ENST00000506966 295 ntBASIC16.93■□□□□ 0.3
BRCA1P38398 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC16.93■□□□□ 0.3
BRCA1P38398 IMMP1L-215ENST00000534812 612 ntTSL 2 BASIC16.93■□□□□ 0.3
BRCA1P38398 AL512356.1-201ENST00000548203 535 ntTSL 3 BASIC16.93■□□□□ 0.3
BRCA1P38398 SMIM28-201ENST00000573100 855 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
BRCA1P38398 AL137028.2-201ENST00000614601 256 ntBASIC16.93■□□□□ 0.3
BRCA1P38398 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
BRCA1P38398 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.92■□□□□ 0.3
BRCA1P38398 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
BRCA1P38398 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
BRCA1P38398 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC16.92■□□□□ 0.3
BRCA1P38398 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC16.92■□□□□ 0.3
BRCA1P38398 HPD-204ENST00000543163 1709 ntTSL 5 BASIC16.92■□□□□ 0.3
BRCA1P38398 AC024075.2-201ENST00000598112 1473 ntBASIC16.92■□□□□ 0.3
BRCA1P38398 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
BRCA1P38398 AC138035.3-201ENST00000622706 2791 ntBASIC16.92■□□□□ 0.3
BRCA1P38398 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
BRCA1P38398 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
BRCA1P38398 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
BRCA1P38398 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
BRCA1P38398 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
BRCA1P38398 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
BRCA1P38398 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
BRCA1P38398 ARR3-201ENST00000307959 1292 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
BRCA1P38398 KLK8-203ENST00000347619 555 ntTSL 2 BASIC16.92■□□□□ 0.3
BRCA1P38398 FOLR1-204ENST00000393681 1061 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
BRCA1P38398 AC005009.2-201ENST00000452471 687 ntTSL 3 BASIC16.92■□□□□ 0.3
BRCA1P38398 AC103736.1-201ENST00000524410 605 ntTSL 3 BASIC16.92■□□□□ 0.3
BRCA1P38398 METTL7AP1-201ENST00000547343 496 ntBASIC16.92■□□□□ 0.3
BRCA1P38398 GRAPL-204ENST00000577213 866 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
BRCA1P38398 AC005332.2-201ENST00000590010 930 ntBASIC16.92■□□□□ 0.3
BRCA1P38398 AC134878.2-201ENST00000620700 1265 ntBASIC16.92■□□□□ 0.3
BRCA1P38398 AL499606.1-201ENST00000627866 413 ntTSL 3 BASIC16.92■□□□□ 0.3
BRCA1P38398 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
BRCA1P38398 KRT8P42-201ENST00000405771 1399 ntBASIC16.92■□□□□ 0.3
BRCA1P38398 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
BRCA1P38398 SFPQP1-201ENST00000446621 1786 ntBASIC16.92■□□□□ 0.3
BRCA1P38398 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
BRCA1P38398 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
BRCA1P38398 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
BRCA1P38398 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
BRCA1P38398 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
BRCA1P38398 AC091951.1-201ENST00000512854 2465 ntBASIC16.91■□□□□ 0.3
BRCA1P38398 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
BRCA1P38398 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
BRCA1P38398 IGSF23-201ENST00000402988 989 ntAPPRIS P2 TSL 3 BASIC16.91■□□□□ 0.3
BRCA1P38398 AC079325.1-201ENST00000430386 857 ntBASIC16.91■□□□□ 0.3
BRCA1P38398 C3orf84-203ENST00000545770 706 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
BRCA1P38398 AL109954.1-202ENST00000564051 2148 ntBASIC16.91■□□□□ 0.3
BRCA1P38398 RN7SL202P-201ENST00000584410 262 ntBASIC16.91■□□□□ 0.3
BRCA1P38398 PPY-202ENST00000587006 431 ntTSL 3 BASIC16.91■□□□□ 0.3
BRCA1P38398 AC063977.2-201ENST00000601996 421 ntBASIC16.91■□□□□ 0.3
BRCA1P38398 AL031768.1-201ENST00000606542 701 ntBASIC16.91■□□□□ 0.3
BRCA1P38398 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC16.91■□□□□ 0.3
BRCA1P38398 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
BRCA1P38398 TRAPPC4-214ENST00000533632 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
BRCA1P38398 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
BRCA1P38398 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
BRCA1P38398 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC16.91■□□□□ 0.3
BRCA1P38398 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
BRCA1P38398 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
BRCA1P38398 DNAJB6-204ENST00000429029 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
BRCA1P38398 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
BRCA1P38398 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.91■□□□□ 0.3
BRCA1P38398 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
BRCA1P38398 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
BRCA1P38398 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
BRCA1P38398 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16.91■□□□□ 0.3
BRCA1P38398 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
BRCA1P38398 LINC02433-202ENST00000507108 1395 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
BRCA1P38398 ELP4-223ENST00000640342 1392 ntTSL 5 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms