Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC17.59■□□□□ 0.41
COL5A3P25940 MYMX-201ENST00000573382 817 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
COL5A3P25940 MED11-202ENST00000573708 802 ntTSL 2 BASIC17.59■□□□□ 0.41
COL5A3P25940 RN7SL134P-201ENST00000579756 303 ntBASIC17.59■□□□□ 0.41
COL5A3P25940 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A3P25940 AC110057.1-201ENST00000636031 898 ntBASIC17.59■□□□□ 0.41
COL5A3P25940 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A3P25940 USP39-207ENST00000450066 2086 ntTSL 2 BASIC17.59■□□□□ 0.41
COL5A3P25940 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC17.59■□□□□ 0.41
COL5A3P25940 RCC2P1-201ENST00000452257 1476 ntBASIC17.59■□□□□ 0.41
COL5A3P25940 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A3P25940 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A3P25940 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A3P25940 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A3P25940 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A3P25940 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A3P25940 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A3P25940 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
COL5A3P25940 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
COL5A3P25940 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.41
COL5A3P25940 GZMB-201ENST00000216341 968 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL5A3P25940 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL5A3P25940 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.41
COL5A3P25940 CHEK2-203ENST00000382565 696 ntTSL 5 BASIC17.58■□□□□ 0.41
COL5A3P25940 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC17.58■□□□□ 0.41
COL5A3P25940 CD37-203ENST00000426897 1204 ntTSL 2 BASIC17.58■□□□□ 0.41
COL5A3P25940 BX322557.2-201ENST00000445242 379 ntTSL 3 BASIC17.58■□□□□ 0.41
COL5A3P25940 RN7SL578P-201ENST00000477781 283 ntBASIC17.58■□□□□ 0.41
COL5A3P25940 RPL29P2-202ENST00000498671 657 ntBASIC17.58■□□□□ 0.41
COL5A3P25940 ACY3-202ENST00000529256 933 ntTSL 3 BASIC17.58■□□□□ 0.41
COL5A3P25940 AC018845.3-201ENST00000562536 516 ntTSL 3 BASIC17.58■□□□□ 0.41
COL5A3P25940 AP005899.1-201ENST00000579467 544 ntTSL 3 BASIC17.58■□□□□ 0.41
COL5A3P25940 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC17.58■□□□□ 0.41
COL5A3P25940 NEK4P3-201ENST00000604859 544 ntBASIC17.58■□□□□ 0.41
COL5A3P25940 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.41
COL5A3P25940 AC245100.4-201ENST00000634549 1082 ntTSL 5 BASIC17.58■□□□□ 0.41
COL5A3P25940 FMO6P-201ENST00000236166 1620 ntBASIC17.58■□□□□ 0.41
COL5A3P25940 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL5A3P25940 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL5A3P25940 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
COL5A3P25940 ADK-205ENST00000539909 1866 ntTSL 2 BASIC17.58■□□□□ 0.41
COL5A3P25940 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL5A3P25940 CA2-201ENST00000285379 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL5A3P25940 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC17.58■□□□□ 0.4
COL5A3P25940 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC17.58■□□□□ 0.4
COL5A3P25940 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
COL5A3P25940 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL5A3P25940 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL5A3P25940 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC17.58■□□□□ 0.4
COL5A3P25940 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC17.58■□□□□ 0.4
COL5A3P25940 AC041040.1-201ENST00000425197 460 ntBASIC17.58■□□□□ 0.4
COL5A3P25940 AC010086.2-201ENST00000428616 226 ntBASIC17.58■□□□□ 0.4
COL5A3P25940 PRR34-AS1-203ENST00000451166 877 ntTSL 3 BASIC17.58■□□□□ 0.4
COL5A3P25940 AP003351.1-201ENST00000522743 668 ntTSL 3 BASIC17.58■□□□□ 0.4
COL5A3P25940 C11orf58-207ENST00000525684 575 ntTSL 2 BASIC17.58■□□□□ 0.4
COL5A3P25940 C11orf58-209ENST00000528634 776 ntTSL 5 BASIC17.58■□□□□ 0.4
COL5A3P25940 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL5A3P25940 AC016582.2-202ENST00000587765 1094 ntBASIC17.58■□□□□ 0.4
COL5A3P25940 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL5A3P25940 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL5A3P25940 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL5A3P25940 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL5A3P25940 AC113367.3-201ENST00000508316 1912 ntBASIC17.58■□□□□ 0.4
COL5A3P25940 TUBB4AP1-201ENST00000450755 1325 ntBASIC17.57■□□□□ 0.4
COL5A3P25940 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
COL5A3P25940 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC17.57■□□□□ 0.4
COL5A3P25940 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.57■□□□□ 0.4
COL5A3P25940 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A3P25940 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A3P25940 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A3P25940 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A3P25940 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.57■□□□□ 0.4
COL5A3P25940 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A3P25940 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A3P25940 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A3P25940 DPPA5-201ENST00000370370 679 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A3P25940 OR7E155P-201ENST00000412208 1014 ntBASIC17.57■□□□□ 0.4
COL5A3P25940 AL137244.1-201ENST00000422931 865 ntBASIC17.57■□□□□ 0.4
COL5A3P25940 AP001615.1-201ENST00000423276 461 ntTSL 3 BASIC17.57■□□□□ 0.4
COL5A3P25940 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC17.57■□□□□ 0.4
COL5A3P25940 AAMDC-207ENST00000527134 693 ntTSL 3 BASIC17.57■□□□□ 0.4
COL5A3P25940 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC17.57■□□□□ 0.4
COL5A3P25940 PRR20FP-201ENST00000603320 180 ntBASIC17.57■□□□□ 0.4
COL5A3P25940 CTSH-218ENST00000615999 972 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A3P25940 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A3P25940 AL050341.2-201ENST00000567508 1541 ntBASIC17.57■□□□□ 0.4
COL5A3P25940 USP44-202ENST00000393091 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A3P25940 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A3P25940 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A3P25940 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A3P25940 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A3P25940 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC17.57■□□□□ 0.4
COL5A3P25940 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A3P25940 AC012617.1-204ENST00000586340 2305 ntBASIC17.57■□□□□ 0.4
COL5A3P25940 KRT8P42-201ENST00000405771 1399 ntBASIC17.57■□□□□ 0.4
COL5A3P25940 AC104640.1-201ENST00000562617 2109 ntBASIC17.57■□□□□ 0.4
COL5A3P25940 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL5A3P25940 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL5A3P25940 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC17.56■□□□□ 0.4
COL5A3P25940 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms