Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC12.39□□□□□ -0.43
USF1P22415 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
USF1P22415 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 AJ011931.1-201ENST00000618749 2492 ntBASIC12.39□□□□□ -0.43
USF1P22415 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC12.39□□□□□ -0.43
USF1P22415 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC12.39□□□□□ -0.43
USF1P22415 AC009093.2-202ENST00000620513 2079 ntBASIC12.39□□□□□ -0.43
USF1P22415 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC12.39□□□□□ -0.43
USF1P22415 AMT-239ENST00000636865 1914 ntTSL 5 BASIC12.39□□□□□ -0.43
USF1P22415 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC12.39□□□□□ -0.43
USF1P22415 RAPGEF1-201ENST00000372189 6085 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 AL390755.1-201ENST00000623716 2027 ntBASIC12.39□□□□□ -0.43
USF1P22415 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC12.39□□□□□ -0.43
USF1P22415 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 MIR33B-201ENST00000385104 96 ntBASIC12.39□□□□□ -0.43
USF1P22415 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
USF1P22415 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 MPV17-204ENST00000399052 749 ntTSL 4 BASIC12.39□□□□□ -0.43
USF1P22415 SERF2-209ENST00000409646 559 ntTSL 4 BASIC12.39□□□□□ -0.43
USF1P22415 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC12.39□□□□□ -0.43
USF1P22415 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC12.39□□□□□ -0.43
USF1P22415 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC12.39□□□□□ -0.43
USF1P22415 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 RCC2P8-201ENST00000502779 1035 ntBASIC12.39□□□□□ -0.43
USF1P22415 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC12.39□□□□□ -0.43
USF1P22415 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 PRKXP1-201ENST00000561423 1122 ntBASIC12.39□□□□□ -0.43
USF1P22415 MIR4783-201ENST00000580343 82 ntBASIC12.39□□□□□ -0.43
USF1P22415 AC020922.3-201ENST00000595064 547 ntBASIC12.39□□□□□ -0.43
USF1P22415 AC132192.2-201ENST00000596206 1147 ntBASIC12.39□□□□□ -0.43
USF1P22415 AL133499.1-201ENST00000596207 608 ntBASIC12.39□□□□□ -0.43
USF1P22415 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC12.39□□□□□ -0.43
USF1P22415 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 ZNF275-201ENST00000370249 5920 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
USF1P22415 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC12.39□□□□□ -0.43
USF1P22415 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC12.39□□□□□ -0.43
USF1P22415 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC12.39□□□□□ -0.43
USF1P22415 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC12.39□□□□□ -0.43
USF1P22415 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
USF1P22415 MVK-214ENST00000629016 1591 ntTSL 5 BASIC12.39□□□□□ -0.43
USF1P22415 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC12.38□□□□□ -0.43
USF1P22415 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
USF1P22415 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC12.38□□□□□ -0.43
USF1P22415 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
USF1P22415 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
USF1P22415 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC12.38□□□□□ -0.43
USF1P22415 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
USF1P22415 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
USF1P22415 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
USF1P22415 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
USF1P22415 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
USF1P22415 RER1-203ENST00000378513 3000 ntTSL 3 BASIC12.38□□□□□ -0.43
USF1P22415 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
USF1P22415 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
USF1P22415 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
USF1P22415 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
USF1P22415 ACE3P-201ENST00000423435 1973 ntBASIC12.38□□□□□ -0.43
USF1P22415 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
USF1P22415 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
USF1P22415 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC12.38□□□□□ -0.43
USF1P22415 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC12.38□□□□□ -0.43
USF1P22415 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
USF1P22415 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
USF1P22415 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
USF1P22415 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC12.38□□□□□ -0.43
USF1P22415 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC12.38□□□□□ -0.43
USF1P22415 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
USF1P22415 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC12.38□□□□□ -0.43
USF1P22415 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
USF1P22415 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC12.38□□□□□ -0.43
USF1P22415 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC12.38□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms