Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A2P12110 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A2P12110 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
COL6A2P12110 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A2P12110 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A2P12110 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC14.39□□□□□ -0.11
COL6A2P12110 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A2P12110 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A2P12110 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A2P12110 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A2P12110 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC14.39□□□□□ -0.11
COL6A2P12110 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC14.39□□□□□ -0.11
COL6A2P12110 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A2P12110 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
COL6A2P12110 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
COL6A2P12110 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC14.39□□□□□ -0.11
COL6A2P12110 FAM8A4P-201ENST00000435433 1213 ntBASIC14.39□□□□□ -0.11
COL6A2P12110 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.39□□□□□ -0.11
COL6A2P12110 RNA5SP486-201ENST00000515961 83 ntBASIC14.39□□□□□ -0.11
COL6A2P12110 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC14.39□□□□□ -0.11
COL6A2P12110 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC14.39□□□□□ -0.11
COL6A2P12110 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.39□□□□□ -0.11
COL6A2P12110 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC14.39□□□□□ -0.11
COL6A2P12110 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC14.39□□□□□ -0.11
COL6A2P12110 AC027601.3-201ENST00000622907 509 ntBASIC14.39□□□□□ -0.11
COL6A2P12110 RPSAP52-203ENST00000622976 1023 ntBASIC14.39□□□□□ -0.11
COL6A2P12110 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC14.39□□□□□ -0.11
COL6A2P12110 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC14.39□□□□□ -0.11
COL6A2P12110 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A2P12110 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
COL6A2P12110 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC14.39□□□□□ -0.11
COL6A2P12110 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A2P12110 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A2P12110 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
COL6A2P12110 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A2P12110 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC14.39□□□□□ -0.11
COL6A2P12110 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC14.39□□□□□ -0.11
COL6A2P12110 PPT1-213ENST00000641319 2388 ntBASIC14.39□□□□□ -0.11
COL6A2P12110 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A2P12110 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A2P12110 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A2P12110 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC14.39□□□□□ -0.11
COL6A2P12110 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
COL6A2P12110 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A2P12110 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
COL6A2P12110 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL6A2P12110 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC14.39□□□□□ -0.11
COL6A2P12110 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A2P12110 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A2P12110 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
COL6A2P12110 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC14.38□□□□□ -0.11
COL6A2P12110 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A2P12110 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A2P12110 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A2P12110 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A2P12110 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A2P12110 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC14.38□□□□□ -0.11
COL6A2P12110 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC14.38□□□□□ -0.11
COL6A2P12110 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC14.38□□□□□ -0.11
COL6A2P12110 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A2P12110 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
COL6A2P12110 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A2P12110 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A2P12110 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC14.38□□□□□ -0.11
COL6A2P12110 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A2P12110 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A2P12110 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A2P12110 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A2P12110 MGST3-203ENST00000367885 680 ntTSL 2 BASIC14.38□□□□□ -0.11
COL6A2P12110 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A2P12110 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.38□□□□□ -0.11
COL6A2P12110 MIR661-201ENST00000384842 89 ntBASIC14.38□□□□□ -0.11
COL6A2P12110 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A2P12110 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC14.38□□□□□ -0.11
COL6A2P12110 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC14.38□□□□□ -0.11
COL6A2P12110 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC14.38□□□□□ -0.11
COL6A2P12110 AL355864.2-201ENST00000447420 863 ntBASIC14.38□□□□□ -0.11
COL6A2P12110 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
COL6A2P12110 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC14.38□□□□□ -0.11
COL6A2P12110 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC14.38□□□□□ -0.11
COL6A2P12110 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC14.38□□□□□ -0.11
COL6A2P12110 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC14.38□□□□□ -0.11
COL6A2P12110 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC14.38□□□□□ -0.11
COL6A2P12110 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC14.38□□□□□ -0.11
COL6A2P12110 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC14.38□□□□□ -0.11
COL6A2P12110 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC14.38□□□□□ -0.11
COL6A2P12110 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC14.38□□□□□ -0.11
COL6A2P12110 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC14.38□□□□□ -0.11
COL6A2P12110 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC14.38□□□□□ -0.11
COL6A2P12110 AC010319.3-201ENST00000597028 470 ntBASIC14.38□□□□□ -0.11
COL6A2P12110 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC14.38□□□□□ -0.11
COL6A2P12110 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A2P12110 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A2P12110 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A2P12110 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A2P12110 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A2P12110 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A2P12110 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A2P12110 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL6A2P12110 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms