Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 AC092862.1-201ENST00000541534 533 ntBASIC13.11□□□□□ -0.31
SPTA1P02549 AC068831.5-201ENST00000557387 328 ntBASIC13.11□□□□□ -0.31
SPTA1P02549 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC13.11□□□□□ -0.31
SPTA1P02549 MIR4640-201ENST00000581824 90 ntBASIC13.11□□□□□ -0.31
SPTA1P02549 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC13.11□□□□□ -0.31
SPTA1P02549 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC13.11□□□□□ -0.31
SPTA1P02549 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC13.11□□□□□ -0.31
SPTA1P02549 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SPTA1P02549 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC13.11□□□□□ -0.31
SPTA1P02549 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SPTA1P02549 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SPTA1P02549 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC13.11□□□□□ -0.31
SPTA1P02549 CEP112-202ENST00000392769 3517 ntAPPRIS P4 TSL 5 BASIC13.11□□□□□ -0.31
SPTA1P02549 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SPTA1P02549 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SPTA1P02549 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
SPTA1P02549 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC13.11□□□□□ -0.31
SPTA1P02549 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
SPTA1P02549 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SPTA1P02549 ANKRD52-201ENST00000267116 8688 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SPTA1P02549 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
SPTA1P02549 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SPTA1P02549 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC13.11□□□□□ -0.31
SPTA1P02549 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC13.11□□□□□ -0.31
SPTA1P02549 SIGLEC20P-201ENST00000595243 1311 ntBASIC13.11□□□□□ -0.31
SPTA1P02549 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC13.11□□□□□ -0.31
SPTA1P02549 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC13.11□□□□□ -0.31
SPTA1P02549 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
SPTA1P02549 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SPTA1P02549 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SPTA1P02549 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC13.11□□□□□ -0.31
SPTA1P02549 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SPTA1P02549 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SPTA1P02549 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SPTA1P02549 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC13.11□□□□□ -0.31
SPTA1P02549 AL357833.1-201ENST00000413993 832 ntTSL 3 BASIC13.11□□□□□ -0.31
SPTA1P02549 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SPTA1P02549 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC13.11□□□□□ -0.31
SPTA1P02549 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC13.11□□□□□ -0.31
SPTA1P02549 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
SPTA1P02549 RBM4-207ENST00000506523 654 ntTSL 3 BASIC13.11□□□□□ -0.31
SPTA1P02549 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC13.11□□□□□ -0.31
SPTA1P02549 AC104590.1-201ENST00000560813 648 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SPTA1P02549 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC13.11□□□□□ -0.31
SPTA1P02549 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SPTA1P02549 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
SPTA1P02549 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SPTA1P02549 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC13.11□□□□□ -0.31
SPTA1P02549 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
SPTA1P02549 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC13.11□□□□□ -0.31
SPTA1P02549 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SPTA1P02549 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SPTA1P02549 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SPTA1P02549 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SPTA1P02549 AC008536.3-201ENST00000623282 1599 ntBASIC13.11□□□□□ -0.31
SPTA1P02549 RBAK-201ENST00000353796 4125 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
SPTA1P02549 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
SPTA1P02549 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SPTA1P02549 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SPTA1P02549 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SPTA1P02549 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SPTA1P02549 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SPTA1P02549 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SPTA1P02549 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC13.1□□□□□ -0.31
SPTA1P02549 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
SPTA1P02549 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SPTA1P02549 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SPTA1P02549 NAP1L1-201ENST00000261182 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SPTA1P02549 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
SPTA1P02549 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SPTA1P02549 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
SPTA1P02549 DHX34-201ENST00000328771 4372 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
SPTA1P02549 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SPTA1P02549 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC13.1□□□□□ -0.31
SPTA1P02549 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC13.1□□□□□ -0.31
SPTA1P02549 AC092612.1-201ENST00000514501 998 ntBASIC13.1□□□□□ -0.31
SPTA1P02549 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC13.1□□□□□ -0.31
SPTA1P02549 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC13.1□□□□□ -0.31
SPTA1P02549 CICP23-201ENST00000605013 2741 ntBASIC13.1□□□□□ -0.31
SPTA1P02549 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC13.1□□□□□ -0.31
SPTA1P02549 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
SPTA1P02549 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SPTA1P02549 MYB-201ENST00000316528 3571 ntTSL 5 BASIC13.1□□□□□ -0.31
SPTA1P02549 MYB-241ENST00000616088 3573 ntTSL 5 BASIC13.1□□□□□ -0.31
SPTA1P02549 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
SPTA1P02549 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC13.1□□□□□ -0.31
SPTA1P02549 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC13.1□□□□□ -0.31
SPTA1P02549 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SPTA1P02549 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SPTA1P02549 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
SPTA1P02549 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
SPTA1P02549 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SPTA1P02549 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
SPTA1P02549 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SPTA1P02549 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
SPTA1P02549 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SPTA1P02549 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
SPTA1P02549 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC13.1□□□□□ -0.31
SPTA1P02549 AL603832.2-201ENST00000566195 2125 ntBASIC13.1□□□□□ -0.31
SPTA1P02549 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC13.1□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms