Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 ARHGEF33-201ENST00000398800 4300 ntAPPRIS P1 TSL 5 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 HLA-H-201ENST00000383620 1096 ntBASIC10.99□□□□□ -0.65
HLA-DQA1P01909 FO393414.2-201ENST00000405153 598 ntBASIC10.99□□□□□ -0.65
HLA-DQA1P01909 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 AL138918.1-201ENST00000568306 659 ntBASIC10.99□□□□□ -0.65
HLA-DQA1P01909 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 KCNMA1-287ENST00000640632 2808 ntTSL 2 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 NUMA1-233ENST00000616538 6998 ntAPPRIS ALT2 TSL 5 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 SLC4A1-201ENST00000262418 4965 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 DGCR2-206ENST00000545799 4484 ntTSL 5 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 MYO7A-205ENST00000458637 7336 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 LILRA1-201ENST00000251372 1910 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 ITPRIPL1-204ENST00000439118 1946 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 STK3-218ENST00000617590 2485 ntTSL 5 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 MRVI1-202ENST00000424001 5815 ntTSL 5 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 GATC-203ENST00000551765 4244 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 MPP2-219ENST00000612133 4938 ntTSL 5 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 ZNF331-201ENST00000253144 5042 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 PDE9A-201ENST00000291539 2058 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 CACNA1G-209ENST00000502264 6921 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 CACNA1G-221ENST00000510115 6912 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 MDM1-203ENST00000393543 2718 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 SRC-204ENST00000373578 4630 ntAPPRIS P1 TSL 5 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
HLA-DQA1P01909 DGKD-202ENST00000409813 6228 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 ATXN2L-225ENST00000570200 3635 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 GPC4-201ENST00000370828 4960 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 MKX-201ENST00000375790 3846 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 KDM2B-215ENST00000542973 3170 ntTSL 2 BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 TCTN2-202ENST00000426174 2513 ntAPPRIS ALT2 TSL 2 BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 SERPINB1-201ENST00000380739 2619 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 DCAF11-204ENST00000446197 4299 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 CELF2-216ENST00000637215 2724 ntTSL 5 BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 SIX1-203ENST00000554986 1959 ntTSL 3 BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 PRKD1-201ENST00000331968 3726 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 NHEJ1-201ENST00000356853 2094 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 CCT8L2-201ENST00000359963 2060 ntAPPRIS P1 BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 YBX2P1-201ENST00000394192 760 ntBASIC10.98□□□□□ -0.65
HLA-DQA1P01909 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 FABP5-202ENST00000396359 986 ntTSL 5 BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 RARRES2P8-201ENST00000566335 367 ntBASIC10.98□□□□□ -0.65
HLA-DQA1P01909 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 GPR39-203ENST00000622084 900 ntTSL 5 BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 AC134407.3-201ENST00000624035 2139 ntBASIC10.98□□□□□ -0.65
HLA-DQA1P01909 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 ACTN1-204ENST00000438964 3043 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 BSG-215ENST00000618006 1329 ntTSL 2 BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 NPTN-IT1-201ENST00000628401 2283 ntBASIC10.98□□□□□ -0.65
HLA-DQA1P01909 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 AGAP12P-201ENST00000585227 2359 ntBASIC10.98□□□□□ -0.65
HLA-DQA1P01909 TIAM1-201ENST00000286827 7200 ntAPPRIS P1 TSL 5 BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 KCND1-201ENST00000218176 4437 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 GPR173-201ENST00000332582 4485 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 SCN1B-202ENST00000415950 4537 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 RS1-201ENST00000379984 2810 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 MYCBP-201ENST00000397572 2818 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 TMEM41A-203ENST00000421852 2827 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC10.98□□□□□ -0.65
HLA-DQA1P01909 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms