Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RAPGEF3O95398 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RAPGEF3O95398 PSMC5-201ENST00000310144 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RAPGEF3O95398 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RAPGEF3O95398 CD44-203ENST00000278386 484 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RAPGEF3O95398 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RAPGEF3O95398 PDE4DIP-202ENST00000369347 1137 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RAPGEF3O95398 PHBP10-201ENST00000416467 784 ntBASIC21.12■□□□□ 0.97
RAPGEF3O95398 BX322557.2-201ENST00000445242 379 ntTSL 3 BASIC21.12■□□□□ 0.97
RAPGEF3O95398 AC008440.1-201ENST00000455835 439 ntTSL 5 BASIC21.12■□□□□ 0.97
RAPGEF3O95398 SLC25A15P1-201ENST00000456738 342 ntBASIC21.12■□□□□ 0.97
RAPGEF3O95398 AL512356.1-201ENST00000548203 535 ntTSL 3 BASIC21.12■□□□□ 0.97
RAPGEF3O95398 TCL1A-209ENST00000557043 980 ntTSL 3 BASIC21.12■□□□□ 0.97
RAPGEF3O95398 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC21.12■□□□□ 0.97
RAPGEF3O95398 PRR20FP-201ENST00000603320 180 ntBASIC21.12■□□□□ 0.97
RAPGEF3O95398 AL590556.2-202ENST00000636906 844 ntBASIC21.12■□□□□ 0.97
RAPGEF3O95398 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RAPGEF3O95398 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC21.12■□□□□ 0.97
RAPGEF3O95398 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
RAPGEF3O95398 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RAPGEF3O95398 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RAPGEF3O95398 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RAPGEF3O95398 SESN3-201ENST00000278499 1710 ntTSL 2 BASIC21.12■□□□□ 0.97
RAPGEF3O95398 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC21.12■□□□□ 0.97
RAPGEF3O95398 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RAPGEF3O95398 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RAPGEF3O95398 BPIFB6-201ENST00000349552 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RAPGEF3O95398 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC21.11■□□□□ 0.97
RAPGEF3O95398 HLA-DMB-258ENST00000418107 1397 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
RAPGEF3O95398 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
RAPGEF3O95398 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
RAPGEF3O95398 SULT1A2-202ENST00000395630 1322 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
RAPGEF3O95398 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RAPGEF3O95398 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
RAPGEF3O95398 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC21.11■□□□□ 0.97
RAPGEF3O95398 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
RAPGEF3O95398 GZMB-201ENST00000216341 968 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RAPGEF3O95398 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RAPGEF3O95398 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RAPGEF3O95398 IGLV3-9-201ENST00000390316 461 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
RAPGEF3O95398 KRT18P33-201ENST00000398525 1043 ntBASIC21.11■□□□□ 0.97
RAPGEF3O95398 ATP5J-204ENST00000400093 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RAPGEF3O95398 TONSL-AS1-201ENST00000442850 428 ntTSL 5 BASIC21.11■□□□□ 0.97
RAPGEF3O95398 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC21.11■□□□□ 0.97
RAPGEF3O95398 AL137078.1-201ENST00000446280 404 ntTSL 2 BASIC21.11■□□□□ 0.97
RAPGEF3O95398 LINC01875-201ENST00000454477 660 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RAPGEF3O95398 MARK2P17-201ENST00000498560 841 ntBASIC21.11■□□□□ 0.97
RAPGEF3O95398 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC21.11■□□□□ 0.97
RAPGEF3O95398 GRAMD4P6-201ENST00000556999 244 ntBASIC21.11■□□□□ 0.97
RAPGEF3O95398 AC010503.4-201ENST00000615487 688 ntBASIC21.11■□□□□ 0.97
RAPGEF3O95398 AC106782.5-201ENST00000616011 337 ntBASIC21.11■□□□□ 0.97
RAPGEF3O95398 BX322562.1-201ENST00000617004 561 ntBASIC21.11■□□□□ 0.97
RAPGEF3O95398 AC005609.5-201ENST00000624712 1053 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RAPGEF3O95398 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC21.11■□□□□ 0.97
RAPGEF3O95398 TMBIM7P-203ENST00000641617 1718 ntBASIC21.11■□□□□ 0.97
RAPGEF3O95398 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC21.11■□□□□ 0.97
RAPGEF3O95398 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
RAPGEF3O95398 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
RAPGEF3O95398 DDX19B-213ENST00000568625 1681 ntTSL 2 BASIC21.11■□□□□ 0.97
RAPGEF3O95398 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
RAPGEF3O95398 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RAPGEF3O95398 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
RAPGEF3O95398 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RAPGEF3O95398 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RAPGEF3O95398 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC21.11■□□□□ 0.97
RAPGEF3O95398 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RAPGEF3O95398 AC026786.1-201ENST00000540096 1374 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
RAPGEF3O95398 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RAPGEF3O95398 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC21.1■□□□□ 0.97
RAPGEF3O95398 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC21.1■□□□□ 0.97
RAPGEF3O95398 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC21.1■□□□□ 0.97
RAPGEF3O95398 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC21.1■□□□□ 0.97
RAPGEF3O95398 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
RAPGEF3O95398 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC21.1■□□□□ 0.97
RAPGEF3O95398 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RAPGEF3O95398 KDF1-202ENST00000616918 1651 ntTSL 2 BASIC21.1■□□□□ 0.97
RAPGEF3O95398 RNA5SP491-201ENST00000362936 118 ntBASIC21.1■□□□□ 0.97
RAPGEF3O95398 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
RAPGEF3O95398 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
RAPGEF3O95398 SNHG14-201ENST00000414175 610 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RAPGEF3O95398 CTB-178M22.2-201ENST00000519795 503 ntTSL 4 BASIC21.1■□□□□ 0.97
RAPGEF3O95398 AC087442.1-201ENST00000525563 249 ntTSL 2 BASIC21.1■□□□□ 0.97
RAPGEF3O95398 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC21.1■□□□□ 0.97
RAPGEF3O95398 SMIM26-203ENST00000608034 670 ntAPPRIS ALT2 TSL 3 BASIC21.1■□□□□ 0.97
RAPGEF3O95398 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RAPGEF3O95398 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RAPGEF3O95398 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC21.1■□□□□ 0.97
RAPGEF3O95398 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC21.1■□□□□ 0.97
RAPGEF3O95398 MMP19-202ENST00000409200 1431 ntTSL 2 BASIC21.1■□□□□ 0.97
RAPGEF3O95398 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RAPGEF3O95398 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
RAPGEF3O95398 ZEB1-AS1-208ENST00000607166 2503 ntBASIC21.1■□□□□ 0.97
RAPGEF3O95398 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
RAPGEF3O95398 Z98885.3-201ENST00000624882 1757 ntBASIC21.1■□□□□ 0.97
RAPGEF3O95398 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
RAPGEF3O95398 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RAPGEF3O95398 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RAPGEF3O95398 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RAPGEF3O95398 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
RAPGEF3O95398 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms