Protein–RNA interactions for Protein: A0A5B7

TCRBV4S1A1T, T-cell receptor beta variable 29-1 (Fragment), humanhuman

Predictions only

Length 111 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV4S1A1TA0A5B7 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
TCRBV4S1A1TA0A5B7 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC11.77□□□□□ -0.53
TCRBV4S1A1TA0A5B7 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.53
TCRBV4S1A1TA0A5B7 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
TCRBV4S1A1TA0A5B7 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
TCRBV4S1A1TA0A5B7 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
TCRBV4S1A1TA0A5B7 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC11.77□□□□□ -0.53
TCRBV4S1A1TA0A5B7 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
TCRBV4S1A1TA0A5B7 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
TCRBV4S1A1TA0A5B7 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
TCRBV4S1A1TA0A5B7 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC11.77□□□□□ -0.53
TCRBV4S1A1TA0A5B7 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
TCRBV4S1A1TA0A5B7 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
TCRBV4S1A1TA0A5B7 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
TCRBV4S1A1TA0A5B7 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
TCRBV4S1A1TA0A5B7 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 MIR1247-201ENST00000408206 136 ntBASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 GPAA1P2-201ENST00000417923 928 ntBASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 AC079178.1-201ENST00000420915 656 ntBASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 ARTN-209ENST00000479128 471 ntTSL 3 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 PPY2P-201ENST00000582808 702 ntBASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 AC244157.2-201ENST00000616239 1006 ntBASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 ZBTB11-201ENST00000312938 6020 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC11.76□□□□□ -0.53
TCRBV4S1A1TA0A5B7 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC11.75□□□□□ -0.53
TCRBV4S1A1TA0A5B7 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
TCRBV4S1A1TA0A5B7 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
TCRBV4S1A1TA0A5B7 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC11.75□□□□□ -0.53
TCRBV4S1A1TA0A5B7 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
TCRBV4S1A1TA0A5B7 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC11.75□□□□□ -0.53
TCRBV4S1A1TA0A5B7 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC11.75□□□□□ -0.53
TCRBV4S1A1TA0A5B7 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
TCRBV4S1A1TA0A5B7 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
TCRBV4S1A1TA0A5B7 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
TCRBV4S1A1TA0A5B7 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
TCRBV4S1A1TA0A5B7 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
TCRBV4S1A1TA0A5B7 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
TCRBV4S1A1TA0A5B7 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
TCRBV4S1A1TA0A5B7 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
TCRBV4S1A1TA0A5B7 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
TCRBV4S1A1TA0A5B7 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC11.75□□□□□ -0.53
TCRBV4S1A1TA0A5B7 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
TCRBV4S1A1TA0A5B7 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
TCRBV4S1A1TA0A5B7 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC11.75□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms