Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 FAM58BP-201ENST00000439056 645 ntBASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 FAM86HP-204ENST00000513466 959 ntBASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 AC079416.2-201ENST00000625035 1193 ntBASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 CNTNAP3P2-201ENST00000617175 3861 ntBASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
AP4E1Q9UPM8 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 AC012441.2-201ENST00000444843 739 ntBASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 RPL13AP20-201ENST00000459725 609 ntBASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 AC005730.2-201ENST00000564549 1184 ntBASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 NAA38-206ENST00000576384 424 ntTSL 2 BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 AC005962.1-201ENST00000584100 773 ntBASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 KLK11-210ENST00000600362 759 ntTSL 3 BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 AC009884.2-201ENST00000603110 324 ntBASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 RPL35-206ENST00000629845 340 ntTSL 5 BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
AP4E1Q9UPM8 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
AP4E1Q9UPM8 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
AP4E1Q9UPM8 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0.01
AP4E1Q9UPM8 BANP-203ENST00000393207 2438 ntTSL 2 BASIC15.08■□□□□ 0.01
AP4E1Q9UPM8 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
AP4E1Q9UPM8 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
AP4E1Q9UPM8 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
AP4E1Q9UPM8 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
AP4E1Q9UPM8 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC15.08■□□□□ 0.01
AP4E1Q9UPM8 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
AP4E1Q9UPM8 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms