Protein–RNA interactions for Protein: Q9UDT6

CLIP2, CAP-Gly domain-containing linker protein 2, humanhuman

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2Q9UDT6 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP2Q9UDT6 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP2Q9UDT6 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CLIP2Q9UDT6 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
CLIP2Q9UDT6 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP2Q9UDT6 ARHGAP23P1-201ENST00000562773 1937 ntBASIC17.29■□□□□ 0.36
CLIP2Q9UDT6 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP2Q9UDT6 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CLIP2Q9UDT6 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CLIP2Q9UDT6 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP2Q9UDT6 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP2Q9UDT6 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC17.29■□□□□ 0.36
CLIP2Q9UDT6 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLIP2Q9UDT6 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 AL035414.1-201ENST00000451327 857 ntBASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 SNORD3B-2-202ENST00000571722 791 ntBASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 RN7SL774P-201ENST00000577467 290 ntBASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 AC009884.2-201ENST00000603110 324 ntBASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLIP2Q9UDT6 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 BEND3P1-201ENST00000421591 1944 ntBASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 AC092135.3-201ENST00000624151 1846 ntBASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 VDAC1P1-201ENST00000439229 848 ntBASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 HLA-J-204ENST00000495278 958 ntBASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 SCARNA21-201ENST00000517026 139 ntBASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 AC026740.1-201ENST00000607068 791 ntBASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 AL136295.7-201ENST00000619226 1200 ntBASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 RPL35-206ENST00000629845 340 ntTSL 5 BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
CLIP2Q9UDT6 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLIP2Q9UDT6 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
CLIP2Q9UDT6 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLIP2Q9UDT6 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC17.27■□□□□ 0.35
CLIP2Q9UDT6 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CLIP2Q9UDT6 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms