Protein–RNA interactions for Protein: Q9BYV6

TRIM55, Tripartite motif-containing protein 55, humanhuman

Predictions only

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55Q9BYV6 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 CICP16-201ENST00000502609 2813 ntBASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 AC004945.1-201ENST00000416738 983 ntBASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 BNIP3P42-201ENST00000454982 569 ntBASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 AC004066.1-201ENST00000502488 802 ntBASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 AC015936.2-201ENST00000593177 259 ntBASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 BNIP3P29-201ENST00000598302 571 ntBASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 AC011447.5-201ENST00000616168 564 ntBASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 WNT11-204ENST00000621122 789 ntTSL 5 BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 USP3-204ENST00000540797 5474 ntTSL 2 BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 FAM90A12P-201ENST00000519497 2375 ntBASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 FAM90A24P-201ENST00000520792 2369 ntBASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
TRIM55Q9BYV6 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 NSL1-201ENST00000366976 722 ntTSL 2 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 RN7SL399P-201ENST00000471648 279 ntBASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 USP32P1-208ENST00000506594 1164 ntBASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC14.8□□□□□ -0.04
TRIM55Q9BYV6 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 93.7 ms