Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 AKAP10-201ENST00000225737 4072 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 TMCC2-208ENST00000545499 3339 ntAPPRIS ALT2 TSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 HARS-202ENST00000415192 1401 ntTSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 NUTM2E-202ENST00000602967 3623 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 AGGF1-201ENST00000312916 4509 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 ANKRD13A-201ENST00000261739 4148 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 KCNC2-201ENST00000298972 3563 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 HDAC7-202ENST00000354334 4065 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 HDAC7-201ENST00000080059 4095 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 DDR1-224ENST00000376567 3832 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 PIGS-202ENST00000308360 2877 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 AC026434.2-201ENST00000506094 1078 ntBASIC4.55□□□□□ -1.68
SYNE1Q8NF91 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 AC103988.2-201ENST00000561804 725 ntBASIC4.55□□□□□ -1.68
SYNE1Q8NF91 IFT20-206ENST00000578122 834 ntTSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 IFT20-208ENST00000578985 831 ntTSL 3 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 PCNX4-204ENST00000406949 3513 ntTSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 USP20-201ENST00000315480 4458 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 MIR1202-201ENST00000408529 83 ntBASIC4.55□□□□□ -1.68
SYNE1Q8NF91 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 AC022217.1-201ENST00000521069 738 ntBASIC4.55□□□□□ -1.68
SYNE1Q8NF91 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 SNORD3B-2-202ENST00000571722 791 ntBASIC4.55□□□□□ -1.68
SYNE1Q8NF91 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 DHX30-215ENST00000619982 3574 ntAPPRIS ALT1 TSL 5 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 ROR2-201ENST00000375708 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 LTF-203ENST00000426532 2494 ntTSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 SCN4B-201ENST00000324727 4484 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 CDH5-201ENST00000341529 4120 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SYNE1Q8NF91 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms